View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_17 (Length: 289)
Name: NF10925_low_17
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_17 |
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| [»] scaffold0363 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 5569117 - 5568854
Alignment:
| Q |
20 |
accccattgataaaacttaccatttcttatataatcatccaggtcaattagagaaccatgatgaaaacatcggtattaagacaagtggattgataaaata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5569117 |
accccattgataaaacttaccatttcttatataatcatccagttcaattagagaaccatgatgaaaacatcggtattaagacaagtggattgataaaata |
5569018 |
T |
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| Q |
120 |
taattttaatgtatgcaaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcat |
219 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5569017 |
taattttaatgtatacaaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcat |
5568918 |
T |
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| Q |
220 |
cttatcatcttggttctcttgcttgtgtttcgcgaacgcactgccataactccctctctgcttc |
283 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
5568917 |
cttatcatcttggttctcttgcttgtgtttcgccaatgcactgccataactcccggtctgcttc |
5568854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 6313483 - 6313601
Alignment:
| Q |
111 |
gataaaatataattttaatgtatgcaaagact-aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaat |
209 |
Q |
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|||||||| ||||||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
6313483 |
gataaaatttaattttaatgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagctgcttgaaaaagagcattcttccaat |
6313582 |
T |
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| Q |
210 |
tttgcatcatcttatcatc |
228 |
Q |
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| T |
6313583 |
tttgcatcatcttatcatc |
6313601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 14403574 - 14403484
Alignment:
| Q |
136 |
aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatca |
226 |
Q |
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| T |
14403574 |
aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatca |
14403484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 5598190 - 5598310
Alignment:
| Q |
109 |
ttgataaaatataattttaatgtatgcaaagactaaaa-acctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta |
207 |
Q |
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|||| ||||| |||||||||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||| | |
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| T |
5598190 |
ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca |
5598289 |
T |
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| Q |
208 |
attttgcatcatcttatcatc |
228 |
Q |
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|||||| |||||||||||||| |
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| T |
5598290 |
attttgtatcatcttatcatc |
5598310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 5637085 - 5636965
Alignment:
| Q |
109 |
ttgataaaatataattttaatgtatgcaaagactaaaaa-cctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta |
207 |
Q |
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|||| ||||| |||||||||| ||||||||| |||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||| | |
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| T |
5637085 |
ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca |
5636986 |
T |
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| Q |
208 |
attttgcatcatcttatcatc |
228 |
Q |
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|||||| |||||||||||||| |
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| T |
5636985 |
attttgtatcatcttatcatc |
5636965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 32632976 - 32632894
Alignment:
| Q |
142 |
taaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttat |
224 |
Q |
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|||| |||||||||| | ||||||||||| || ||||| || ||||||||||||||||||||| |||||||||||||||||| |
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| T |
32632976 |
taaatacctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttat |
32632894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 5624883 - 5624779
Alignment:
| Q |
115 |
aaatataattttaatgtatgcaaagacta--aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaatttt |
212 |
Q |
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||||||||||||||| ||||||||| || ||||||||| | | | |||||||||||||||||||||||||||||||||||||| | ||| | |||| |
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| T |
5624883 |
aaatataattttaataaatgcaaagattagaaaaacctgtttttggctaaatgaaaaccagacaaattagcagcttgaaaaagagcagtattccattttt |
5624784 |
T |
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| Q |
213 |
gcatc |
217 |
Q |
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||||| |
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| T |
5624783 |
gcatc |
5624779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 5547838 - 5547764
Alignment:
| Q |
143 |
aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatc |
217 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| | |||||||| | ||| | ||||||||| |
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| T |
5547838 |
aaaaacctgtatgtggttgaatgaaaaccagacaaattagcagcttcagaaagagcagtattccatttttgcatc |
5547764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 13164678 - 13164598
Alignment:
| Q |
144 |
aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttat |
224 |
Q |
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||||||||||||| | ||||| || ||||| ||||||| |||| ||||||||||||||| ||||||||| |||||||| |
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| T |
13164678 |
aaaacctgtatgtggtagaatggaatccagataaattagatgcttcgaaaagagcattcttccaattttgcaacatcttat |
13164598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 14403627 - 14403587
Alignment:
| Q |
110 |
tgataaaatataattttaatgtatgcaaagactaaaaacct |
150 |
Q |
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||||||||| || |||||||||||||||||||||||||||| |
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| T |
14403627 |
tgataaaatttatttttaatgtatgcaaagactaaaaacct |
14403587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 15279 - 15369
Alignment:
| Q |
136 |
aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatca |
226 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15279 |
aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatca |
15369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 15226 - 15266
Alignment:
| Q |
110 |
tgataaaatataattttaatgtatgcaaagactaaaaacct |
150 |
Q |
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||||||||| || |||||||||||||||||||||||||||| |
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| T |
15226 |
tgataaaatttatttttaatgtatgcaaagactaaaaacct |
15266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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