View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10925_low_18 (Length: 288)

Name: NF10925_low_18
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10925_low_18
NF10925_low_18
[»] chr8 (1 HSPs)
chr8 (6-288)||(29023459-29023755)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 29023459 - 29023755
Alignment:
Q  6 aattgccaaatttcatttccagtttcagaatcaataagaacgtgacgtagattgcttccttttaattacaacaaacataaataaaagaaaattgcatgca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29023459 aattgccaaatttcatttccagtttcagaatcaataagaacgtgacatagattgcttccttttaattacaacaaacataaataaaagaaaattgcatgca 29023558  T
Q  106 ataatacacataacataacacagat--------------taaacaattatacagaacaaaagtaaccatatagttactgaataataaataatattgaaca 191  Q
    |||||||||||||||||||||| ||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29023559 ataatacacataacataacacatataacacatataagactaaacaattatacagaacaaaagtaaccatatagttactgaataataaataatattgaaca 29023658  T
Q  192 ttcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccatgacctatactagatgtctgatcagggattgattctggct 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29023659 ttcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccatgacctatagtagatgtctgatcagggattgattctggct 29023755  T

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