View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10925_low_19 (Length: 288)

Name: NF10925_low_19
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10925_low_19
NF10925_low_19
[»] chr4 (12 HSPs)
chr4 (1-251)||(50250605-50250855)
chr4 (179-251)||(50669237-50669309)
chr4 (189-230)||(48852849-48852890)
chr4 (186-230)||(48903120-48903164)
chr4 (179-230)||(48705237-48705288)
chr4 (179-217)||(7773696-7773734)
chr4 (195-249)||(49040984-49041038)
chr4 (179-216)||(7771553-7771590)
chr4 (179-216)||(7790238-7790275)
chr4 (186-219)||(48898893-48898926)
chr4 (186-219)||(49044055-49044088)
chr4 (195-251)||(48863421-48863477)
[»] chr6 (2 HSPs)
chr6 (179-251)||(21979465-21979537)
chr6 (189-231)||(21015992-21016034)
[»] chr8 (3 HSPs)
chr8 (187-224)||(12195484-12195521)
chr8 (187-224)||(12439912-12439949)
chr8 (185-219)||(15349038-15349072)
[»] chr1 (1 HSPs)
chr1 (186-251)||(24367327-24367392)
[»] chr7 (1 HSPs)
chr7 (179-230)||(48883984-48884036)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 50250855 - 50250605
Alignment:
Q  1 gttatgaccactcaacggatgattatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagnnnnnnncattgagaaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  50250855 gttatgaccactcaacagatgattatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagtttttttcattgagaaa 50250756  T
Q  101 taatatctggaaacaaattgaaattgagggtacacacttagcttatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250755 taatatctggaaacaaattgaaattgagggtacacacttagcttatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggct 50250656  T
Q  201 attcattggttggcttttccttatgatttattggtctatgttattgttgcc 251  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50250655 attcattggttggcttttcgttatgatttattggtctatgttattgttgcc 50250605  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 50669237 - 50669309
Alignment:
Q  179 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 251  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||  ||| | ||| |||||||||    
T  50669237 aggggttctctttaatgaggctatttattggttggcttttcgttatgatttaaaggtgtttgtcattgttgcc 50669309  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 48852849 - 48852890
Alignment:
Q  189 tttaatggggctattcattggttggcttttccttatgattta 230  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  48852849 tttaatggggctattcattggttggcttttcgtcatgattta 48852890  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 48903120 - 48903164
Alignment:
Q  186 ctctttaatggggctattcattggttggcttttccttatgattta 230  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  48903120 ctctttaatggggctattcattagttggcttttcatcatgattta 48903164  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 48705288 - 48705237
Alignment:
Q  179 aggggttctctttaatggggctattcattggttggcttttccttatgattta 230  Q
    |||||| |||| |||||||||||||||||||||||||| || | ||||||||    
T  48705288 aggggtgctctataatggggctattcattggttggcttatcgtcatgattta 48705237  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 7773734 - 7773696
Alignment:
Q  179 aggggttctctttaatggggctattcattggttggcttt 217  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  7773734 agggtttctatttaatggggctattcattggttggcttt 7773696  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 49041038 - 49040984
Alignment:
Q  195 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttg 249  Q
    ||||||||||||||||||||||||| | ||||| |||  || |||||||||||||    
T  49041038 ggggctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttg 49040984  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 7771553 - 7771590
Alignment:
Q  179 aggggttctctttaatggggctattcattggttggctt 216  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771553 agggtttctatttaatggggctattcattggttggctt 7771590  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 7790238 - 7790275
Alignment:
Q  179 aggggttctctttaatggggctattcattggttggctt 216  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7790238 agggtttctatttaatggggctattcattggttggctt 7790275  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 48898893 - 48898926
Alignment:
Q  186 ctctttaatggggctattcattggttggcttttc 219  Q
    |||| |||||||||||||||||||||||||||||    
T  48898893 ctctataatggggctattcattggttggcttttc 48898926  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 49044088 - 49044055
Alignment:
Q  186 ctctttaatggggctattcattggttggcttttc 219  Q
    |||||||||||||||||||| |||||||||||||    
T  49044088 ctctttaatggggctattcactggttggcttttc 49044055  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 48863421 - 48863477
Alignment:
Q  195 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 251  Q
    ||||||||||||||||||||||||| | ||||| ||   || |||||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcc 48863477  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 21979537 - 21979465
Alignment:
Q  179 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 251  Q
    ||||||| |||||||| ||||||||||||||||| ||||||  ||||||||||  || | |||||||||||||    
T  21979537 aggggttttctttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcc 21979465  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 21015992 - 21016034
Alignment:
Q  189 tttaatggggctattcattggttggcttttccttatgatttat 231  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  21015992 tttaatggggctattcattggttggcttttcgtcatgatttat 21016034  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 12195484 - 12195521
Alignment:
Q  187 tctttaatggggctattcattggttggcttttccttat 224  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12195484 tctttaatggggctattcattggttggcttctccttat 12195521  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 12439912 - 12439949
Alignment:
Q  187 tctttaatggggctattcattggttggcttttccttat 224  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12439912 tctttaatggggctattcattggttggcttctccttat 12439949  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 15349038 - 15349072
Alignment:
Q  185 tctctttaatggggctattcattggttggcttttc 219  Q
    ||||| |||||||||||||||||||||||||||||    
T  15349038 tctctataatggggctattcattggttggcttttc 15349072  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 24367327 - 24367392
Alignment:
Q  186 ctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 251  Q
    |||||| ||||||||||||| |||||| |||||| ||||||| ||   ||| ||||||||||||||    
T  24367327 ctctttcatggggctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgcc 24367392  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 48883984 - 48884036
Alignment:
Q  179 aggggttctctttaatggggctattcattggttgg-cttttccttatgattta 230  Q
    |||| ||| ||||||||||||||||||||||||||  ||||| ||||||||||    
T  48883984 agggtttccctttaatggggctattcattggttggttttttcgttatgattta 48884036  T

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