View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_22 (Length: 252)
Name: NF10925_low_22
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 54879878 - 54879637
Alignment:
| Q |
1 |
aaaaatgaaagataaactggtaacaaactggaccgctaaacctttttgaactcgttgtagaatattcacatcctctaaaactaaaaagctaaaagtatca |
100 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
54879878 |
aaaaatgaaagataaaccggtaacaaactgcgtcgctaaacctttttgaactcgttgtagaatattcacatcctctaacactaaaaagtcaaaagtatca |
54879779 |
T |
|
| Q |
101 |
aacataaatggtattaaaacatgtcgattgtca----aagctcactttctcgtatttgaacatttttcttaaaattgtttctagaggtgttgtctaatag |
196 |
Q |
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|||||||||| ||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54879778 |
aacataaatgatattaaaacatgttgattgtcagtcaaatcttactttctcatatttgaacatttttcttaaaattgtttctagaggtgttgtctaatag |
54879679 |
T |
|
| Q |
197 |
taaatgctctgatactgaaaaaacctcattaaatttgttcat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
54879678 |
taaatgctctgatactgaaaaaacctcattaaatttgttcat |
54879637 |
T |
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