View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_25 (Length: 241)
Name: NF10925_low_25
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 55896023 - 55895800
Alignment:
| Q |
1 |
ttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactccaaggaagtcttggatcttgtttctggtacctcccaagctgcaagtggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896023 |
ttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactccaaggaagtcttggatcttgtttctggtacctcccaagctgcaagtggg |
55895924 |
T |
|
| Q |
101 |
attggttcgcgtcaaagaagaagaaatgtaagttcctactgttttaaggatttaattgatatgcactaaaataagaatttttactcataactgcttgatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55895923 |
attggttcgcgtcaaagaagaagaaatgtaagttcatactgttttaaggatttaattgatatgcactaaaataagaatttttactcataactgcttgatc |
55895824 |
T |
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| Q |
201 |
attagaaatatttgacttttaatc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
55895823 |
attagaaatatttgacttttaatc |
55895800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1028940 - 1029153
Alignment:
| Q |
1 |
ttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactccaaggaagtcttggatcttgtttctggtacctcccaagctgcaagtggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028940 |
ttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactctaaggaagtcttggatcttgtttctggtacctcccaagctgcaagtggg |
1029039 |
T |
|
| Q |
101 |
attggttcgcgtcaaagaagaagaaatgtaagttcctactgttttaaggatttaattgatatgcactaaaataagaatttttactcataactgcttgatc |
200 |
Q |
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| T |
1029040 |
attggttcgcgtcaaagaagaagaaatgtaagttcatac----------atttaattgatatgcactaaaataagaatttttactcataactgcttgatc |
1029129 |
T |
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| Q |
201 |
attagaaatatttgacttttaatc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
1029130 |
attagaaatatttgacttttaatc |
1029153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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