View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_26 (Length: 240)
Name: NF10925_low_26
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14305280 - 14305503
Alignment:
| Q |
1 |
aacttatagccaaaagggtagttaccaaaaaggctagtttgaacaaaaaggtgattttatagtcagaatctttctcttgcagaagtggttttgtgattga |
100 |
Q |
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| T |
14305280 |
aacttatagccaaaagggtagttaccaaaaaggctagtttgaacaaaaaggtgattttatagtcagaatctttctcttgcagaagtggttttgtgattga |
14305379 |
T |
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| Q |
101 |
ggagctagtgtttgctcttgaatagaatcttgaatagagtttttgagctgcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaaga |
200 |
Q |
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| T |
14305380 |
ggagctagtgtttgctcttgaatagaatcttgaatagagtttttgagctgcaaaagctaagagggagagcaaaaacaaggaatcaagagcagaaagtaga |
14305479 |
T |
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| Q |
201 |
agtctctgaggacaaggagatagg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
14305480 |
agtctctgaggacaaggagatagg |
14305503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14321671 - 14321893
Alignment:
| Q |
1 |
aacttatagccaaaagggtagttaccaaaaaggctagtttgaacaaaaaggtgattttatagtcagaatctttctcttgcagaagtggttttgtgattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
14321671 |
aacttatagccaaaagggtagttaccaaaaaggctagtttgaaccaaaaggtgattctatagtcagaatctttgtcctgcagaagtggttttgtgattga |
14321770 |
T |
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| Q |
101 |
ggagctagtgtttgctcttgaatagaatcttgaatagagtttttgagctgcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaaga |
200 |
Q |
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| T |
14321771 |
ggagctagtgtttgctcttgaatagaatcttgaatagagtttttgagctgcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaacaaga |
14321870 |
T |
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| Q |
201 |
agtctctgaggacaaggagatag |
223 |
Q |
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|||||||||||||| |||||||| |
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| T |
14321871 |
agtctctgaggacatggagatag |
14321893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14283522 - 14283745
Alignment:
| Q |
1 |
aacttatagccaaaagggtagttaccaaaaaggctagtttgaacaaaaaggtgattttatagtcagaatctttctcttgcagaagtggttttgtgattga |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||||| | |
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| T |
14283522 |
aacttatagccaaaagggtagttaacaaaaaggctagtttgaaccaaaaggtgattctatagtcagaatcgttcttttgcagaagtggttttgtgattaa |
14283621 |
T |
|
| Q |
101 |
ggagctagtgtttgctcttgaatagaatcttgaatagagtttttgagctgcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaaga |
200 |
Q |
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|||| ||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14283622 |
ggaggtagagttggaacttgaatagaatcttgaatagagtttttgagctgaaaaagctaagagggagagcaaaaacaaggaatcaagagcagaaagaaga |
14283721 |
T |
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| Q |
201 |
agtctctgaggacaaggagatagg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
14283722 |
agtctctgaggacaaggagatagg |
14283745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 14270875 - 14270966
Alignment:
| Q |
130 |
ttgaatagagtttttgagctgcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagat |
221 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
14270875 |
ttgaatagagtttgtgagctgcaaaagctaagagggagagcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagat |
14270966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 25886356 - 25886564
Alignment:
| Q |
4 |
ttatagccaaaagggtagttaccaaaaaggctagtttgaacaaaaaggtgattttatagtcagaatctttctcttgcagaagtggttttgtgattgagga |
103 |
Q |
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||||||||||||||||||||||||| |||| ||| |||||| ||| |||| | ||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
25886356 |
ttatagccaaaagggtagttaccaacaaggttagcttgaaccaaagagtgactctatagtcagaatctttctctttcagaagtggctttgtgattgagga |
25886455 |
T |
|
| Q |
104 |
gctagtgtttgctcttgaatagaatcttgaatagagtttttgagctgcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagt |
203 |
Q |
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| |||||||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
25886456 |
ggtagtgtttgc------------tcttgaatagagtttgtgaactgcagaagctaagagggagagcaaaaacaaggaatcaagagcagaaaggagaagt |
25886543 |
T |
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| Q |
204 |
ctctgaggacaaggagatagg |
224 |
Q |
| |
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|| |||||||| ||||||||| |
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| T |
25886544 |
ctttgaggacatggagatagg |
25886564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 44350200 - 44350401
Alignment:
| Q |
4 |
ttatagccaaaagggtagttaccaaaaaggctagtttgaacaaaaaggtgattttatagtcagaatctttctcttgcagaagtggttttgtgattgagga |
103 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||||||| ||| |||| | |||||| ||| |||||||||| ||||||||||||||||||||| || |
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| T |
44350200 |
ttatagccaaaatggtagttaccaacaagggtagtttgaaccaaagagtgactctatagttagagtctttctctttcagaagtggttttgtgattgaaga |
44350299 |
T |
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| Q |
104 |
gctagtgtttgctcttgaatagaatcttgaatagagtttttgagctgcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagt |
203 |
Q |
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| || |||| | |||| | || ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |||||| |
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| T |
44350300 |
gttattgttggaatttgagttgattcttgaatagagtttgtgagctgcaaaagctaagagggagag---------ggaatcaagagcagaaaggagaagt |
44350390 |
T |
|
| Q |
204 |
ctctgaggaca |
214 |
Q |
| |
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|| |||||||| |
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| T |
44350391 |
ctttgaggaca |
44350401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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