View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_27 (Length: 240)
Name: NF10925_low_27
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_27 |
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| [»] scaffold1995 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold1995 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 125 - 347
Alignment:
| Q |
18 |
acctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcaaattggatgggatacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
125 |
acctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcgaattggatgggatacat |
224 |
T |
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| Q |
118 |
agccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttactccctcatgtatcaaatataa |
217 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
225 |
agccgtttcaaacgatgaaacaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttatgagtaaatgttactccctcatgtatcaaatataa |
324 |
T |
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| Q |
218 |
gaaataattggtcaaagaaagtt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
325 |
gaaataattggtcaaagaaagtt |
347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 38552462 - 38552684
Alignment:
| Q |
18 |
acctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcaaattggatgggatacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38552462 |
acctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcgaattggatgggatacat |
38552561 |
T |
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| Q |
118 |
agccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttactccctcatgtatcaaatataa |
217 |
Q |
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| T |
38552562 |
agccgtttcaaacgatgaaacaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttatgagtaaatgttactccctcatgtatcaaatataa |
38552661 |
T |
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| Q |
218 |
gaaataattggtcaaagaaagtt |
240 |
Q |
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| T |
38552662 |
gaaataattggtcaaagaaagtt |
38552684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 38546063 - 38546250
Alignment:
| Q |
18 |
acctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcaaattggatgggatacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38546063 |
acctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcgaattggatgggatacat |
38546162 |
T |
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| Q |
118 |
agccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttactccctcatg |
205 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38546163 |
agctgtttcaaacgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttattccctcatg |
38546250 |
T |
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