View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_32 (Length: 238)
Name: NF10925_low_32
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 44222710 - 44222503
Alignment:
| Q |
18 |
cctgttttgtgcaagcaatataagcagactcactgcaacacagttgatgatgaagccagttgtactgtaccaatgtcgctttctacaaaagggtttaagt |
117 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44222710 |
cctgttttgtgcaagaaata--agcagactcactgcaacacagttgatgatgaagccagttgtactgtaccaatgtcgctttctacaaaagggtttaagt |
44222613 |
T |
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| Q |
118 |
ttaacgtacttcacaactcaacagatatagctaggaagaaattgggatctgcttcagcacttccacctcatttccatgtttgtttagtgctttttatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44222612 |
ttaacgtacttcacaactcaacagatatagctaggaagaaattgggatctgcttcatcacttccacctcatttccatgtttgtttagtgctttttatatt |
44222513 |
T |
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| Q |
218 |
taacttgtgt |
227 |
Q |
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|||||||||| |
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| T |
44222512 |
taacttgtgt |
44222503 |
T |
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