View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_34 (Length: 227)
Name: NF10925_low_34
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 36348163 - 36348361
Alignment:
| Q |
14 |
atgaaatatggatttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacatcagagcctacaaaaacaaagttagtta |
113 |
Q |
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| T |
36348163 |
atgaaatatggatttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacgtcagagcctacaaaaacaaagttagtta |
36348262 |
T |
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| Q |
114 |
attaacacgtatttcaatccaattaatatctttgattatgaaagttgtaag-ccgtattctaaacaattcaattggaacagtcaaatcatagttattaa |
211 |
Q |
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| T |
36348263 |
attaacacgtatttcaatccaattaatatctttgattatgaaagttgtaagcccgtattctaaacaattcaattggaacagtcaaatcatagttattaa |
36348361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 36359454 - 36359581
Alignment:
| Q |
25 |
atttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacatcagagcctacaaaaacaaagttagttaattaacacgta |
124 |
Q |
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| T |
36359454 |
atttgttgcgcattttgtattgtcaaatcctcaactattaagtccttgcaactatcaaatgttagagcctacaaaaataaatttagttaattaacaagta |
36359553 |
T |
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| Q |
125 |
tttcaatccaattaatatctttgattatgaaa |
156 |
Q |
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| T |
36359554 |
t----atccaattaaaatccttgattatgaaa |
36359581 |
T |
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