View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_4 (Length: 596)
Name: NF10925_low_4
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_4 |
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| [»] scaffold1995 (1 HSPs) |
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Alignment Details
Target: scaffold1995 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 298 - 881
Alignment:
| Q |
1 |
tgttactccctcatgtatcaagtataagaaataattggtcaaagtaagttgatgtatttagtccaaaataactaaatatatcaacttcacatgatcaatt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
298 |
tgttactccctcatgtatcaaatataagaaataattggtcaaagaaagttgatgtatttagtccaaaataactaaatatatcaacttcacttgatcaatt |
397 |
T |
|
| Q |
101 |
tttgtgtatatttgagatcggaaaaaatattttgcaaatgaacttttgattnnnnnnntgagttttccttgacgttatttatgtttggaactaacaggtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
398 |
tttgtgtatatttgagatcggaaaaaatattttgcaaatgaacttttgattaaaaaaatgagttttccttgacgttatttatgtttggaactaacaggtc |
497 |
T |
|
| Q |
201 |
gtagagacatcgttatcgcttggcgaggaacagttactcatgtcgaatgggtagccaatcttcaaaattttcttaaacctatttaccaagacattccttg |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
498 |
gtagagacatcgttatcgcttggcgaggaaccgttactcatgtcgaatgggtagccaatcttcaaaattttcttaaacctatttaccaagacattccttg |
597 |
T |
|
| Q |
301 |
tccagacaacgatgttcgagtagaagcaggttttcttgatatgtacactgatagacaaacaaaagacggttattgtaaatattctgctagagaacaagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| ||| |
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| T |
598 |
tccagacaacgatgttcgagtagaagcaggttttcttgatatgtacaccgatagacaaacaaaagacggttattgtaaatattcctcaagagaacaggtt |
697 |
T |
|
| Q |
401 |
ttaggagaagtgaaaaggttgttagagaaatttcctaacgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaagtg |
500 |
Q |
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| T |
698 |
ttaggggaagtgagaaggttgttagcgaaatttcctaacgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaagtg |
797 |
T |
|
| Q |
501 |
cgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
584 |
Q |
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| T |
798 |
cgtttgatatagcagaaacaaggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 38552635 - 38553218
Alignment:
| Q |
1 |
tgttactccctcatgtatcaagtataagaaataattggtcaaagtaagttgatgtatttagtccaaaataactaaatatatcaacttcacatgatcaatt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38552635 |
tgttactccctcatgtatcaaatataagaaataattggtcaaagaaagttgatgtatttagtccaaaataactaaatatatcaacttcacttgatcaatt |
38552734 |
T |
|
| Q |
101 |
tttgtgtatatttgagatcggaaaaaatattttgcaaatgaacttttgattnnnnnnntgagttttccttgacgttatttatgtttggaactaacaggtc |
200 |
Q |
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| T |
38552735 |
tttgtgtatatttgagatcggaaaaaatattttgcaaatgaacttttgattaaaaaaatgagttttccttgacgttatttatgtttggaactaacaggtc |
38552834 |
T |
|
| Q |
201 |
gtagagacatcgttatcgcttggcgaggaacagttactcatgtcgaatgggtagccaatcttcaaaattttcttaaacctatttaccaagacattccttg |
300 |
Q |
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| T |
38552835 |
gtagagacatcgttatcgcttggcgaggaaccgttactcatgtcgaatgggtagccaatcttcaaaattttcttaaacctatttaccaagacattccttg |
38552934 |
T |
|
| Q |
301 |
tccagacaacgatgttcgagtagaagcaggttttcttgatatgtacactgatagacaaacaaaagacggttattgtaaatattctgctagagaacaagtt |
400 |
Q |
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||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||| || |||||||||||| |
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| T |
38552935 |
tccggacaacgacgttcgagtagaagcaggttttctcgatatgtacaccgatagacacataaaagacggttattgtaaatattccgcaagagaacaagtt |
38553034 |
T |
|
| Q |
401 |
ttaggagaagtgaaaaggttgttagagaaatttcctaacgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaagtg |
500 |
Q |
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| T |
38553035 |
ttaggggaagtgagaaggttgttagcgaaatttcctaacgaagaagttagtattacgttaacgggacatagtttaggtagtgctatggcaacattaagtg |
38553134 |
T |
|
| Q |
501 |
cgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
584 |
Q |
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| T |
38553135 |
cgtttgatatagcagaaacaaggttaaatgttagggaaaatggtgaaaaaattcatgtttctgttttttcattttctggaccta |
38553218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 176 - 584
Target Start/End: Original strand, 38546359 - 38546768
Alignment:
| Q |
176 |
tatttatgttt-ggaactaacaggtcgtagagacatcgttatcgcttggcgaggaacagttactcatgtcgaatgggtagccaatcttcaaaattttctt |
274 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
38546359 |
tatttatgttttggaactaacaggtcgtagagacatcgttattgcttggcgaggaaccgttactcatgttgaatgggtagccaatcttcaaaattacctt |
38546458 |
T |
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| Q |
275 |
aaacctatttaccaagacattccttgtccagacaacgatgttcgagtagaagcaggttttcttgatatgtacactgatagacaaacaaaagacggttatt |
374 |
Q |
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| T |
38546459 |
aaacctctttacaaagacattccttgtccggacaacgacgttcgagtagaagcaggttttctcgatatgtacaccgatagacacataaaagacggttatt |
38546558 |
T |
|
| Q |
375 |
gtaaatattctgctagagaacaagttttaggagaagtgaaaaggttgttagagaaatttcctaacgaagaagtaagtattacgttaaccggacatagttt |
474 |
Q |
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|||||||||| || ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
38546559 |
gtaaatattccgcaagagaacaagttttaggggaagtgagaaggttgttagcgaaatttcctaacgaagaagttagtattacgttaacgggacatagttt |
38546658 |
T |
|
| Q |
475 |
agggagtgctatggcaacattaagtgcgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattt |
574 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
38546659 |
aggaagtgctatggcaacattaagtgcgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttctgttttttcattt |
38546758 |
T |
|
| Q |
575 |
tctggaccta |
584 |
Q |
| |
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|||||||||| |
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| T |
38546759 |
tctggaccta |
38546768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 38546279 - 38546363
Alignment:
| Q |
52 |
atgtatttagtccaaaat---aactaaatatatcaacttcacatgatcaatttttgtgtata-tttgagatcggaaaaaatattt |
132 |
Q |
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| T |
38546279 |
atgtatttagtccaaaatttgaactaaatatatcaacttcacttgatcaatttatgagtatattttgagatccgaaaaaatattt |
38546363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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