View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10925_low_5 (Length: 486)
Name: NF10925_low_5
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_5 |
 | |
|
| [»] scaffold0363 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Complemental strand, 5569117 - 5568658
Alignment:
| Q |
20 |
accccattgataaaacttaccatttcttatataatcatccaggtcaattagagaaccatgatgaaaacatcggtattaagacaagtggattgataaaata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5569117 |
accccattgataaaacttaccatttcttatataatcatccagttcaattagagaaccatgatgaaaacatcggtattaagacaagtggattgataaaata |
5569018 |
T |
|
| Q |
120 |
taattttaatgtatgcaaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcat |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5569017 |
taattttaatgtatacaaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcat |
5568918 |
T |
|
| Q |
220 |
cttatcatcttggttctcttgcttgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatggtagaacacagga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5568917 |
cttatcatcttggttctcttgcttgtgtttcgccaatgcactgccataactcccggtctgcttccgcacatgtgaagggtcaacatggtagaacacagga |
5568818 |
T |
|
| Q |
320 |
ataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaaca |
419 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5568817 |
atcacaccaatgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacaccatgttgaagaagcatagttctctgagaaca |
5568718 |
T |
|
| Q |
420 |
caacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568717 |
caacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctc |
5568658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 136 - 479
Target Start/End: Complemental strand, 14403574 - 14403228
Alignment:
| Q |
136 |
aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttc |
235 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| |
|
|
| T |
14403574 |
aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttg |
14403475 |
T |
|
| Q |
236 |
tcttgct---tgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatggtagaacacaggaataacaccaacgt |
332 |
Q |
| |
|
||||||| | ||||| | |||||| |||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
14403474 |
tcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgt |
14403375 |
T |
|
| Q |
333 |
tgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacag |
432 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||| ||||| ||||||||| |||||||||| || |||||||| ||||||||||||||||| || |
|
|
| T |
14403374 |
tgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaag |
14403275 |
T |
|
| Q |
433 |
agttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
14403274 |
agtggattgtttgattgctttaacaagttctgaccaaacatcatctc |
14403228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 111 - 479
Target Start/End: Original strand, 6313483 - 6313855
Alignment:
| Q |
111 |
gataaaatataattttaatgtatgcaaagact-aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaat |
209 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
6313483 |
gataaaatttaattttaatgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagctgcttgaaaaagagcattcttccaat |
6313582 |
T |
|
| Q |
210 |
tttgcatcatcttatcatcttggttctcttg---cttgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatg |
306 |
Q |
| |
|
||||||||||||||||||| | || |||| ||||||||| |||||| |||||||||| || |||||||| ||| ||||||||||||||||| |
|
|
| T |
6313583 |
tttgcatcatcttatcatcatttttgccttgtttcttgtgtttaatcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatg |
6313682 |
T |
|
| Q |
307 |
gtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatag |
406 |
Q |
| |
|
||||||||| ||||||||| |||| ||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
6313683 |
gtagaacactggaataacaacaaccttgtcatcttcatttttgttacaacactccattatttcaacaagttcgttcaaacaccatgttgaagaggcatag |
6313782 |
T |
|
| Q |
407 |
ttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
|| || |||||||| |||||||| | ||| |||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
6313783 |
ttttccgagaacaccacaagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctc |
6313855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 109 - 479
Target Start/End: Original strand, 5598190 - 5598564
Alignment:
| Q |
109 |
ttgataaaatataattttaatgtatgcaaagactaaaaa-cctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta |
207 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| |||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
5598190 |
ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca |
5598289 |
T |
|
| Q |
208 |
attttgcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaaca |
304 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||| ||||||| || | ||| ||| ||| |||| | || ||| ||| ||||||||||||||| |
|
|
| T |
5598290 |
attttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaaca |
5598389 |
T |
|
| Q |
305 |
tggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcat |
404 |
Q |
| |
|
||||| || |||||||| ||| |||||||||| || ||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
5598390 |
tggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcat |
5598489 |
T |
|
| Q |
405 |
agttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5598490 |
agttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctc |
5598564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 109 - 479
Target Start/End: Complemental strand, 5637085 - 5636711
Alignment:
| Q |
109 |
ttgataaaatataattttaatgtatgcaaagactaaaaa-cctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta |
207 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| |||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
5637085 |
ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca |
5636986 |
T |
|
| Q |
208 |
attttgcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaaca |
304 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||| ||||||| || | ||| ||| ||| |||| | || ||| ||| ||||||||||||||| |
|
|
| T |
5636985 |
attttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaaca |
5636886 |
T |
|
| Q |
305 |
tggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcat |
404 |
Q |
| |
|
||||| || |||||||| ||| |||||||||| || ||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
5636885 |
tggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcat |
5636786 |
T |
|
| Q |
405 |
agttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5636785 |
agttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctc |
5636711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 115 - 479
Target Start/End: Complemental strand, 5624883 - 5624520
Alignment:
| Q |
115 |
aaatataattttaatgtatgcaaagacta--aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaatttt |
212 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||| | | | |||||||||||||||||||||||||||||||||||||| | ||| | |||| |
|
|
| T |
5624883 |
aaatataattttaataaatgcaaagattagaaaaacctgtttttggctaaatgaaaaccagacaaattagcagcttgaaaaagagcagtattccattttt |
5624784 |
T |
|
| Q |
213 |
gcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatggta |
309 |
Q |
| |
|
||||| |||| | ||| |||||| ||||||| || | ||| |||||||||| || |||| ||| ||| |||||||||||||||||||| |
|
|
| T |
5624783 |
gcatc------tcatggtcgttgccttgctccttgtgtttagccagagcagtgccataacttccggtctgtttccgcacttgtgaagggtcaacatggta |
5624690 |
T |
|
| Q |
310 |
gaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttc |
409 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||||| || || |||||| |
|
|
| T |
5624689 |
gaacacaggaataacaacaacattgtcatcttcatttttgttattacactccattatttgaacgagttcgttcaaacaccatgttgatgacgcgtagttc |
5624590 |
T |
|
| Q |
410 |
tctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
|| |||||||| |||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5624589 |
tccgagaacaccacaagatacagagtggattgtttgattgctttcacaagttctgcccaaacttcatctc |
5624520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 143 - 479
Target Start/End: Complemental strand, 5547838 - 5547499
Alignment:
| Q |
143 |
aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttctcttgct |
242 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| | |||||||| | ||| | ||||||||| |||| | ||| |||||| |
|
|
| T |
5547838 |
aaaaacctgtatgtggttgaatgaaaaccagacaaattagcagcttcagaaagagcagtattccatttttgcatc------tcatggtcgttgccttgct |
5547745 |
T |
|
| Q |
243 |
t---gtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtc |
339 |
Q |
| |
|
| |||||| || || ||| ||||||||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
5547744 |
tcttgtgtttagccaaggcagtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtagaacacaggaataacaacaacgttgtcatc |
5547645 |
T |
|
| Q |
340 |
ttcatttttgttacgg------cactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacaga |
433 |
Q |
| |
|
||||||||||||| | ||||||||| ||||| ||||| ||||||||| |||||||||| || ||||||| |||||||| |||||||||| | |
|
|
| T |
5547644 |
ttcatttttgttaatgtcgaataactccattatctcaaccagttcgttcaaacaccatgttgaagatgcgtagttcttcgagaacacgacaagaaacaaa |
5547545 |
T |
|
| Q |
434 |
gttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
|| |||||||| ||||| ||| ||||||||| |||||||| ||||| |
|
|
| T |
5547544 |
gtggattgtttcattgccttcacaagttctgcccaaacttgatctc |
5547499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 287 - 479
Target Start/End: Complemental strand, 13164547 - 13164355
Alignment:
| Q |
287 |
acatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaac |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||| ||||| | |||||||||| || ||| ||||| ||||||| |
|
|
| T |
13164547 |
acatgtgaagggtcaacatggtagaacacaggaataacaacaacgttatcattttcattgttgttgctacactccattatttgaactagttcgttcaaac |
13164448 |
T |
|
| Q |
387 |
acaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
|| |||||||| | || ||||||||||||||||| |||||||| ||||| |||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
13164447 |
accatgttgaaaatgcgtagttctctgagaacacgacaagaaaaagagtggattcattgattgctttctgaagttctccccaaacttcatctc |
13164355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 142 - 471
Target Start/End: Complemental strand, 32632976 - 32632656
Alignment:
| Q |
142 |
taaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttctcttgc |
241 |
Q |
| |
|
|||| |||||||||| | ||||||||||| || ||||| || ||||||||||||||||||||| |||||||||||||||||| ||| | | | | |
|
|
| T |
32632976 |
taaatacctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttatgatcacagccttgcttc |
32632877 |
T |
|
| Q |
242 |
ttgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtctt |
341 |
Q |
| |
|
|||||||| || |||||| |||| ||||| || |||| ||| ||| | || ||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
32632876 |
ttgtgttttgccaacgcagtgccgtaacttccagtctgtttccgcacgcgggaggggtcaatatggtaaaacacaggaataacagcaacgttgtc----- |
32632782 |
T |
|
| Q |
342 |
catttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattg |
441 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||| ||||||||| |||||||||| |||||||||| |||||||| || | ||| | ||| ||||| |
|
|
| T |
32632781 |
----tttgttactacactccattatttcaacgagttcgttcaaacaccatgttgaagacgcatagttcttcgagaacactaccaaaaagatagtggattg |
32632686 |
T |
|
| Q |
442 |
tttgattgctttctcaagttctggccaaac |
471 |
Q |
| |
|
||||||||||||| |||||||| |||||| |
|
|
| T |
32632685 |
tttgattgctttcgtaagttctgcccaaac |
32632656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 266 - 423
Target Start/End: Original strand, 12190381 - 12190535
Alignment:
| Q |
266 |
taactccctctctgcttctccacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccatta |
365 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || | | |||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |
|
|
| T |
12190381 |
taactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcatta |
12190477 |
T |
|
| Q |
366 |
gttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaac |
423 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
12190478 |
tttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaac |
12190535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 266 - 423
Target Start/End: Original strand, 12434809 - 12434963
Alignment:
| Q |
266 |
taactccctctctgcttctccacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccatta |
365 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || | | |||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |
|
|
| T |
12434809 |
taactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcatta |
12434905 |
T |
|
| Q |
366 |
gttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaac |
423 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
12434906 |
tttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaac |
12434963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 354 - 479
Target Start/End: Complemental strand, 5562456 - 5562331
Alignment:
| Q |
354 |
ggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgcttt |
453 |
Q |
| |
|
|||| ||||||| || ||| ||||||||||||||| |||||||||| || |||||||| |||||||| |||||||||| ||| |||||||| ||||| || |
|
|
| T |
5562456 |
ggcattccattatttgaacgagttcattcaaacaccatgttgaagacgcgtagttctccgagaacacgacaagaaacaaagtggattgtttcattgcctt |
5562357 |
T |
|
| Q |
454 |
ctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
| ||||||||| |||||||||||||| |
|
|
| T |
5562356 |
cacaagttctgcccaaacttcatctc |
5562331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 306 - 423
Target Start/End: Original strand, 12178726 - 12178840
Alignment:
| Q |
306 |
ggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcata |
405 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
12178726 |
ggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcata |
12178822 |
T |
|
| Q |
406 |
gttctctgagaacacaac |
423 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
12178823 |
gttttctgagaacacaac |
12178840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 306 - 423
Target Start/End: Original strand, 12423154 - 12423268
Alignment:
| Q |
306 |
ggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcata |
405 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
12423154 |
ggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcata |
12423250 |
T |
|
| Q |
406 |
gttctctgagaacacaac |
423 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
12423251 |
gttttctgagaacacaac |
12423268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 479
Target Start/End: Complemental strand, 5573003 - 5572781
Alignment:
| Q |
241 |
cttgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtct |
340 |
Q |
| |
|
||||||||| || || ||| |||| |||||||| |||||||| || |||||||||||||||||||| | ||||||||| |||| ||||| | | |
|
|
| T |
5573003 |
cttgtgttttgccaaagcagtgccgtaactccccgtctgcttccggacgtgtgaagggtcaacatggta-----cgggaataacaacaacattgtctttt |
5572909 |
T |
|
| Q |
341 |
tcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgatt |
440 |
Q |
| |
|
|||||||||| || | | ||||| ||||||||||| ||||||||| |||||||| ||||| |||||||| |||||||||| ||| || | |
|
|
| T |
5572908 |
tcatttttgtgac---atttcattatttcaacaagtttgttcaaacaccatgttgaac--------ttctccgagaacacgacaagaaacaaagtggaat |
5572820 |
T |
|
| Q |
441 |
gtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |
|
|
| T |
5572819 |
ccttgattgctttcaagagttctgtccaaacttcatctc |
5572781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 13164678 - 13164598
Alignment:
| Q |
144 |
aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttat |
224 |
Q |
| |
|
||||||||||||| | ||||| || ||||| ||||||| |||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
13164678 |
aaaacctgtatgtggtagaatggaatccagataaattagatgcttcgaaaagagcattcttccaattttgcaacatcttat |
13164598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 14403627 - 14403587
Alignment:
| Q |
110 |
tgataaaatataattttaatgtatgcaaagactaaaaacct |
150 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
14403627 |
tgataaaatttatttttaatgtatgcaaagactaaaaacct |
14403587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 5562505 - 5562473
Alignment:
| Q |
293 |
gaagggtcaacatggtagaacacaggaataaca |
325 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
5562505 |
gaagggtcaacatggtagaacacaggattaaca |
5562473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 136 - 479
Target Start/End: Original strand, 15279 - 15625
Alignment:
| Q |
136 |
aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttc |
235 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| |
|
|
| T |
15279 |
aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttg |
15378 |
T |
|
| Q |
236 |
tcttgct---tgtgtttcgcgaacgcactgccataactccctctctgcttctccacatgtgaagggtcaacatggtagaacacaggaataacaccaacgt |
332 |
Q |
| |
|
||||||| | ||||| | |||||| |||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
15379 |
tcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgt |
15478 |
T |
|
| Q |
333 |
tgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacag |
432 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||| ||||| ||||||||| |||||||||| || |||||||| ||||||||||||||||| || |
|
|
| T |
15479 |
tgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaag |
15578 |
T |
|
| Q |
433 |
agttgattgtttgattgctttctcaagttctggccaaacttcatctc |
479 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
15579 |
agtggattgtttgattgctttaacaagttctgaccaaacatcatctc |
15625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 15226 - 15266
Alignment:
| Q |
110 |
tgataaaatataattttaatgtatgcaaagactaaaaacct |
150 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
15226 |
tgataaaatttatttttaatgtatgcaaagactaaaaacct |
15266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 19496002 - 19496108
Alignment:
| Q |
356 |
cactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttct |
455 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||| | | ||| || ||||||||||||||||| || ||||| |||||||||| || ||||||||| |
|
|
| T |
19496002 |
cacttcattatttcaacaagttcatccaaacaccaactggaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttca |
19496101 |
T |
|
| Q |
456 |
caagttc |
462 |
Q |
| |
|
||||||| |
|
|
| T |
19496102 |
caagttc |
19496108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 16334795 - 16334755
Alignment:
| Q |
374 |
agttcattcaaacacaatgttgaagaagcatagttctctga |
414 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
16334795 |
agttcattcaaacaccattttgaagaagcatagttttctga |
16334755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 17661045 - 17660989
Alignment:
| Q |
369 |
caacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaa |
425 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||| | ||||| ||||||| |
|
|
| T |
17661045 |
caacaagttcattcaaacaaaaagttgaggaagcatagttgttagagaaaacaacaa |
17660989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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