View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_8 (Length: 462)
Name: NF10925_low_8
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 43654006 - 43653561
Alignment:
| Q |
1 |
agatcgatcagcagaactaaactagcaatccattacacatggctgcaatgaactcaagtgtattagcttgtagctatgccatatctggttctgagctcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43654006 |
agatcgatcagcagaactaaactagcaatccattacacatggctgcaatgaactcaagtgtattagcttgtagctatgccatatctggttctgagctcaa |
43653907 |
T |
|
| Q |
101 |
tgcaaagctcatttcagtgccctctgctgcatcaccaggggtttcaggtatcaagctaccattgatcaaggctcagcaggtgagaattcctgaagccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653906 |
tgcaaagctcatttcagtgccctctgctgcatcaccaggggtttcaggtatcaagctaccattgatcaaggctcagcaggtgagaattcctgaagccaaa |
43653807 |
T |
|
| Q |
201 |
gaatcaagagcaagtgatggaagaagaaatgctcttgctttattggcagctacacttttcaccactgctgtttcagcctcaaattcttctgctaatgctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43653806 |
gaatcaagagcaagtgatggaagaagaaatgctcttgctttattggcagctacacttttcaccactgctgtttcagcctccaattcttctgctaatgctg |
43653707 |
T |
|
| Q |
301 |
gcgttattgaagaataccttgaaaaaagcaaggccaataaggtac-nnnnnnnnaatctttcttcccttgtaagaagctaannnnnnnaccaattttatc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
43653706 |
gcgttattgaagaataccttgaaaaaagcaaggccaataaggtactttttttttaatctttcttcccttgtgagaagctaatttttttaccaattttatc |
43653607 |
T |
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| Q |
400 |
ctatgttaagaaaatcttctatttttaagcttaggtaacgtgctat |
445 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653606 |
ctttgttaagaaaatcttctatttttaagcttaggtaacgtgctat |
43653561 |
T |
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