View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_9 (Length: 451)
Name: NF10925_low_9
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_9 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 5962933 - 5963366
Alignment:
| Q |
18 |
gttgcagattcattgagattcacatctgcattatcaattggtttagcagttctttttctcgtcattgctggggggatctcaattatcaagattattagtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5962933 |
gttgcagattcattgagattcacatctgcattatcaattggattagcagttctttttctcgtcattgctggggggatctcaattatcaagattattagtg |
5963032 |
T |
|
| Q |
118 |
gacgcattggaatgcccagactcttccctgtcattactgatgtagattctgtttttgatctattcactgtatttcctgtgctgatgacagcttatatctg |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5963033 |
gacgcattgggatgcccagactcttccctgtcattactgatgtagattctgtttttgatctattcactgtatttcctgtgctgatgacagcttatatctg |
5963132 |
T |
|
| Q |
218 |
tcactacaatggtatgaaattgtttgaaacctttgcttaataaccgattcccttgttttaatgtttttactcagaattgacttgtgaatttctaagtttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5963133 |
tcactacaatggtatgaaattgtttgaaacctttgcttaataatcgattcccttgttttaatgtttttactcagaattgacttgtgaatttctaagtttc |
5963232 |
T |
|
| Q |
318 |
ttatggatttgcatgaagaaggttgaggtcttctgactacttattccaaaaccatcacttcattccatttccaactaatttgcaaagaaaccatgcatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5963233 |
ttatggatttgcatgaagaaggttgaggtcttctgactacttattccaaaaccatcacttcattccatttccaactaatttgcaaagaaaccatgcatgt |
5963332 |
T |
|
| Q |
418 |
caactttttatatgctataatgatattgattcct |
451 |
Q |
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| T |
5963333 |
caactttttatatgctataatgatattgattcct |
5963366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5967953 - 5968185
Alignment:
| Q |
19 |
ttgcagattcattgagattcacatctgcattatcaattggtttagcagttctttttctcgtcattgctggggggatctcaattatcaagattattagtgg |
118 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||||| | |||||||||||||||||||||||||| || |
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| T |
5967953 |
ttgcagattcattgagattcacgtctgcattgtcaattggattagcagttcttttccttatcattgccgtagggatctcaattatcaagattattagcgg |
5968052 |
T |
|
| Q |
119 |
acgcattggaatgcccagactcttccctgtcattactgatgtagattctgtttttgatctattcactgtatttcctgtgctgatgacagcttatatctgt |
218 |
Q |
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||||||| ||||| ||||||||||| ||||||||||||| || ||| ||||| ||||||||||||||| ||||||||||||||||||| ||| | ||| |
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| T |
5968053 |
cggcattgggatgccaagactcttcccggtcattactgatgcagcttcagttttcgatctattcactgtagttcctgtgctgatgacagcatatgtatgt |
5968152 |
T |
|
| Q |
219 |
cactacaatggtatgaaattgtttgaaaccttt |
251 |
Q |
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|||||||||||||| ||| ||||||||||||| |
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| T |
5968153 |
cactacaatggtatcgaatagtttgaaaccttt |
5968185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8716139 - 8715907
Alignment:
| Q |
19 |
ttgcagattcattgagattcacatctgcattatcaattggtttagcagttctttttctcgtcattgctggggggatctcaattatcaagattattagtgg |
118 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||||| | |||||||||||||||||||||||||| || |
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| T |
8716139 |
ttgcagattcattgagattcacgtctgcattgtcaattggattagcagttcttttccttatcattgccgtagggatctcaattatcaagattattagcgg |
8716040 |
T |
|
| Q |
119 |
acgcattggaatgcccagactcttccctgtcattactgatgtagattctgtttttgatctattcactgtatttcctgtgctgatgacagcttatatctgt |
218 |
Q |
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||||||| ||||| ||||||||||| ||||||||||||| || ||| ||||| ||||||||||||||| |||| |||||||||||||| || | ||| |
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| T |
8716039 |
cggcattgggatgccaagactcttcccggtcattactgatgcagcttcagttttcgatctattcactgtagttccggtgctgatgacagcatacgtatgt |
8715940 |
T |
|
| Q |
219 |
cactacaatggtatgaaattgtttgaaaccttt |
251 |
Q |
| |
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|||||||||||||| ||| ||||||||||||| |
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| T |
8715939 |
cactacaatggtatcgaatagtttgaaaccttt |
8715907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 5934341 - 5934553
Alignment:
| Q |
18 |
gttgcagattcattgagattcacatctgcattatcaattggtttagcagttctttttctcgtcattgctggggggatctcaattatcaagattattagtg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||| || ||||||| | |||||||||||||||||||||||||||| |
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| T |
5934341 |
gttgcagattctttgagattcacatctgcattatcagttggattagcagttgttttccttatcattgccgtagggatctcaattatcaagattattagtg |
5934440 |
T |
|
| Q |
118 |
gacgcattggaatgcccagactcttccctgtcattactgatgtagattctgtttttgatctattcactgtatttcctgtgctgatgacagcttatatctg |
217 |
Q |
| |
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|| ||||||| ||||| ||||||||||| ||||||||||||| || ||| |||||||| |||||||| ||| |||||||| || |||| ||||| ||||| |
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| T |
5934441 |
gaggcattgggatgccaagactcttcccggtcattactgatgcagcttcagtttttgacctattcaccgtagttcctgtgttggtgaccgcttacatctg |
5934540 |
T |
|
| Q |
218 |
tcactacaatggt |
230 |
Q |
| |
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||||||||||||| |
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| T |
5934541 |
tcactacaatggt |
5934553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 5984015 - 5984232
Alignment:
| Q |
19 |
ttgcagattcattgagattcacatctgcattatcaattggtttagcagttctttttctcgtcattgctggggggatctcaattatcaagattattagtgg |
118 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||| || |||| || | ||||||||||| ||||||||||||||| || |
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| T |
5984015 |
ttgcagattcattgagattcacgtctgcattgtcagttggattagcagttgttttccttatcatagccgtggggatctcaactatcaagattattagcgg |
5984114 |
T |
|
| Q |
119 |
acgcattggaatgcccagactcttccctgtcattactgatgtagattctgtttttgatctattcactgtatttcctgtgctgatgacagcttatatctgt |
218 |
Q |
| |
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|||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || || |||||| |
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| T |
5984115 |
gggcattgagattcccagactcttcccgatcattactgatgtagattctgtttttgatctattcacggtagctcctgtgctgatgactgcatacatctgt |
5984214 |
T |
|
| Q |
219 |
cactacaatggtatgaaa |
236 |
Q |
| |
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|||| ||||||| |||| |
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| T |
5984215 |
cactttaatggtaagaaa |
5984232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 428
Target Start/End: Original strand, 5968235 - 5968345
Alignment:
| Q |
318 |
ttatggatttgcatgaagaaggttgaggtcttctgactacttattccaaaaccatcacttcattccatttccaactaatttgcaaagaaaccatgcatgt |
417 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| || |||||| |||||| || |||||||||| || |||| || ||| | ||| |
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| T |
5968235 |
ttatggatttgcatgaagaagattaaggtcttctgactacttattccataagcatcacctcattctatgtccaactaatctgaaaagtaagcatacgtgt |
5968334 |
T |
|
| Q |
418 |
caactttttat |
428 |
Q |
| |
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||| ||||||| |
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| T |
5968335 |
caattttttat |
5968345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 411
Target Start/End: Original strand, 5984435 - 5984528
Alignment:
| Q |
318 |
ttatggatttgcatgaagaaggttgaggtcttctgactacttattccaaaaccatcacttcattccatttccaactaatttgcaaagaaaccat |
411 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |||||||||| |||| || ||| ||||||||| |||| || ||||| ||||||||||| |
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| T |
5984435 |
ttatgtatttgcatgaagaaggttaaggtcttttgactacttagtccataagcatagtctcattccatgtccatcttatttgaaaagaaaccat |
5984528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 426
Target Start/End: Original strand, 5934635 - 5934755
Alignment:
| Q |
308 |
tctaagtttcttatggatttgcatgaagaaggttg--aggtcttctgactacttattccaaaaccatcacttcattccatttccaactaatttgcaaaga |
405 |
Q |
| |
|
|||||||| |||| |||||| ||||||| |||| ||||||||||| |||| |||||| | |||||| |||| | || ||||||||||||| ||||| |
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| T |
5934635 |
tctaagttggttatagatttgtttgaagaaagttgtgaggtcttctgattactcattccatatgcatcacctcatcctatgtccaactaatttgaaaaga |
5934734 |
T |
|
| Q |
406 |
aaccatgcatgtcaacttttt |
426 |
Q |
| |
|
|||| || ||||||| |||| |
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| T |
5934735 |
aaccgtgtctgtcaacctttt |
5934755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 5628986 - 5628930
Alignment:
| Q |
177 |
ctattcactgtatttcctgtgctgatgacagcttatatctgtcactacaatggtatg |
233 |
Q |
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||||||||||| |||||||| | |||| || |||||||||||||||||||||||| |
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| T |
5628986 |
ctattcactgtggttcctgtgtttgtgactgcctatatctgtcactacaatggtatg |
5628930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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