View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10926_high_2 (Length: 308)

Name: NF10926_high_2
Description: NF10926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10926_high_2
NF10926_high_2
[»] chr1 (1 HSPs)
chr1 (1-308)||(46795465-46795769)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 46795769 - 46795465
Alignment:
Q  1 cctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactcttcttgatgattcactactttctattcctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795769 cctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactcttcttgatgattcactactttctattcctt 46795670  T
Q  101 tcactacatcaacacatcatgatgttgttccattccctgatgctaattttgcagattgtaacaacactgcaatgtttgaacaagataatggctacaactt 200  Q
    ||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795669 tcac---atcaacacatcatgatgttgttccattccctgatactaattttgcagattgtaacaacactgcaatgtttgaacaagataatggctacaactt 46795573  T
Q  201 tggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaagatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795572 tggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaagatt 46795473  T
Q  301 cacacatc 308  Q
    ||||||||    
T  46795472 cacacatc 46795465  T

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