View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10927_high_3 (Length: 416)

Name: NF10927_high_3
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10927_high_3
NF10927_high_3
[»] chr5 (2 HSPs)
chr5 (62-228)||(20745867-20746033)
chr5 (257-356)||(20746062-20746161)
[»] chr6 (5 HSPs)
chr6 (64-228)||(26909520-26909684)
chr6 (257-359)||(26909384-26909490)
chr6 (63-123)||(13070206-13070266)
chr6 (66-129)||(14361357-14361420)
chr6 (64-123)||(15356096-15356155)
[»] chr2 (2 HSPs)
chr2 (62-228)||(25808575-25808741)
chr2 (63-123)||(28654848-28654908)
[»] scaffold0011 (2 HSPs)
scaffold0011 (65-228)||(135223-135386)
scaffold0011 (299-357)||(135458-135515)
[»] chr7 (3 HSPs)
chr7 (63-228)||(23068673-23068839)
chr7 (14-62)||(2994891-2994939)
chr7 (63-123)||(2755393-2755453)
[»] chr8 (2 HSPs)
chr8 (63-123)||(28156892-28156952)
chr8 (63-123)||(3730642-3730702)
[»] chr3 (1 HSPs)
chr3 (64-123)||(38285664-38285723)
[»] chr1 (2 HSPs)
chr1 (62-123)||(20261028-20261089)
chr1 (63-108)||(6163782-6163827)
[»] scaffold0576 (1 HSPs)
scaffold0576 (64-123)||(1086-1145)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 20745867 - 20746033
Alignment:
Q  62 tcactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgctaacaaaaaactggctttgataagtataatagcgttttgt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20745867 tcactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgctaacaaaaaactggctttgataagtataatagcgttttgt 20745966  T
Q  162 tgcaagtgctaatataagggtacatctaaaatagcactttctccaaaagtgctaatattggcaattt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20745967 tgcaagtgctaatataagggtacatctaaaatagcactttctccgaaagtgctaatattggcaattt 20746033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 257 - 356
Target Start/End: Original strand, 20746062 - 20746161
Alignment:
Q  257 tgatgatggcggttttgagagagtattcacaaagtggatacttattgttagcactttgtgtgttgaacgctatcttatatcctaacaaaaagggtgtttt 356  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20746062 tgatgatggcggttttgagagagtattcagaaagtggatacttattgttagcactttgtgtgttgaacgctatcttatatcctaacaaaaagggtgtttt 20746161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 26909684 - 26909520
Alignment:
Q  64 actacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgctaacaaaaaactggctttgataagtataatagcgttttgttg 163  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26909684 actacgccaattttgacatttagtagcgctcagttaatagcacttttagaaaaagtgctaacaaaaaactggctttgataagtataatagcgttttgttg 26909585  T
Q  164 caagtgctaatataagggtacatctaaaatagcactttctccaaaagtgctaatattggcaattt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26909584 caagtgctaatataagggtacatctaaaatagcactttctccaaaagtgctaatattggcaattt 26909520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 26909490 - 26909384
Alignment:
Q  257 tgatgatggcggttttgagagagt----attcacaaagtggatacttattgttagcactttgtgtgttgaacgctatcttatatcctaacaaaaagggtg 352  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26909490 tgatgatggcggttttgagagagtgagtattcacaaagtggatacttattgttagcactttgtgtgttgaacgctatcttatatcctaacaaaaagggtg 26909391  T
Q  353 tttttaa 359  Q
    |||||||    
T  26909390 tttttaa 26909384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 13070266 - 13070206
Alignment:
Q  63 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||||| ||| |||||    
T  13070266 cactacgccaattttgaaatttagtagcgctaatttaatagcacttttagagaaaatgcta 13070206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 14361420 - 14361357
Alignment:
Q  66 tacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgctaacaaaa 129  Q
    |||||||||||||| |||||||||| || |||||||| |||||||||| ||| ||||| |||||    
T  14361420 tacgccaattttgagatttagtagcgctaatttaataacacttttagagaaaatgctatcaaaa 14361357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 15356096 - 15356155
Alignment:
Q  64 actacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  15356096 actacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgcta 15356155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 25808575 - 25808741
Alignment:
Q  62 tcactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgctaacaaaaaactggctttgataagtataatagcgttttgt 161  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||    
T  25808575 tcactacgccaattttgacatttagtagcgcccatttaataacacttttagaaaaagtgctaacaaaaaactgactttgttaagtaaaatagtgttttgt 25808674  T
Q  162 tgcaagtgctaatataagggtacatctaaaatagcactttctccaaaagtgctaatattggcaattt 228  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25808675 tgcaagtgctaatataatagtacatctaaaatagcactttctccaaaagtgctaatattggcaattt 25808741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 28654848 - 28654908
Alignment:
Q  63 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    |||||| ||||||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  28654848 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgcta 28654908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 65 - 228
Target Start/End: Original strand, 135223 - 135386
Alignment:
Q  65 ctacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgctaacaaaaaactggctttgataagtataatagcgttttgttgc 164  Q
    ||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  135223 ctacgccaattttaacatttaatagcgcccatttaatagcacttttagaaaaagtgctaacaaaaaactgactttgttaagtacaatagtgttttgttgc 135322  T
Q  165 aagtgctaatataagggtacatctaaaatagcactttctccaaaagtgctaatattggcaattt 228  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  135323 aagtgctaatacaagagtacatctaaaatagcactttcttcaaaagtgctaatattgacaattt 135386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 135458 - 135515
Alignment:
Q  299 tattgttagcactttgtgtgttgaacgctatcttata-tcctaacaaaaagggtgttttt 357  Q
    ||||||||||||||  |||| ||||||||||| |||| ||||||||||||||| ||||||    
T  135458 tattgttagcactt--tgtgctgaacgctatcctatactcctaacaaaaagggggttttt 135515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 23068839 - 23068673
Alignment:
Q  63 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaa-gtgctaacaaaaaactggctttgataagtataatagcgttttgt 161  Q
    |||||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||  |||| |||||| |||||||||||||    
T  23068839 cactacgccaattttgacatttagtaacgcccatttaatagcacttttagaaaaaagtgctaacaaaaaactgaatttgttaagtacaatagcgttttgt 23068740  T
Q  162 tgcaagtgctaatataagggtacatctaaaatagcactttctccaaaagtgctaatattggcaattt 228  Q
    ||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||||||    
T  23068739 tgcaagtgctattataagagtacatcaaatatagcactttctccaaaagtgctaatattggcaattt 23068673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 2994891 - 2994939
Alignment:
Q  14 agacttaggcgttaagtttgaaggtctaaattatattttaacatagact 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2994891 agacttaggcgttaagtttgaaggtctaaattatattttaacatagact 2994939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 2755453 - 2755393
Alignment:
Q  63 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    |||||| ||||||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  2755453 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgcta 2755393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 28156892 - 28156952
Alignment:
Q  63 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||||| ||| |||||    
T  28156892 cactacgccaattttgagatttagtagcgctaatttaatagcacttttagagaaaatgcta 28156952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 3730642 - 3730702
Alignment:
Q  63 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    |||||| ||||||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  3730642 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgcta 3730702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 38285664 - 38285723
Alignment:
Q  64 actacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    |||||||||||||||| |||||||||  || ||||||||||||||||||||||| |||||    
T  38285664 actacgccaattttgagatttagtagagctaatttaatagcacttttagaaaaaatgcta 38285723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 20261028 - 20261089
Alignment:
Q  62 tcactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    ||||||| ||||||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  20261028 tcactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgcta 20261089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 6163827 - 6163782
Alignment:
Q  63 cactacgccaattttgacatttagtagcactcatttaatagcactt 108  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||    
T  6163827 cactacgccaattttgagatttagtagcgctaatttaatagcactt 6163782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 1086 - 1145
Alignment:
Q  64 actacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 123  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  1086 actacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgcta 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University