View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10927_high_4 (Length: 389)
Name: NF10927_high_4
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 47686018 - 47686389
Alignment:
| Q |
1 |
caattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaagtaagtatttcgatatggaaggcaa |
100 |
Q |
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| T |
47686018 |
caattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtatcatggaaactaaaacaagtaagtatttcgatatggaaggcaa |
47686117 |
T |
|
| Q |
101 |
aacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatggtgattcgcgtaagaagtttgctgaa |
200 |
Q |
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| T |
47686118 |
aacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatggtgattcgcgtaagaagtttgctgaa |
47686217 |
T |
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| Q |
201 |
aagagtgtgaaagtaatgaatgaatcaagtagtagaagggatgttaatgacactatctatggtttggttcagtgtacaccagatttgtctaaacaagaat |
300 |
Q |
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| T |
47686218 |
aagagtgtgaaagtaatgaatgaatcaagtagtagaagtgatgttaatgacactatttatggtttggttcagtgtacaccagatttgtctaaacaagaat |
47686317 |
T |
|
| Q |
301 |
gtactgaatgtttggattcggctttcgggaatttttcaagatggtgtatgaaaggttgtatgtatcttggtc |
372 |
Q |
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| T |
47686318 |
gtactgaatgtttggattcggctttcgggaatttttcaagatggtgtatgaaaggttgtatgtatcttggtc |
47686389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 47673904 - 47674275
Alignment:
| Q |
1 |
caattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaagtaagtatttcgatatggaaggcaa |
100 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| || |
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| T |
47673904 |
caattggttacttcgacttgtgtagtttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaagtaattatttcaatatcaaagctaa |
47674003 |
T |
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| Q |
101 |
aacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatggtgattcgcgtaagaagtttgctgaa |
200 |
Q |
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||| | | |||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
47674004 |
tacaagggcggatgatgcatttaatcaaacacttcttgatttgttggatgaacttaaaaccgtggccgctgatggtgattcgcgtaagaagtttgctgaa |
47674103 |
T |
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| Q |
201 |
aagagtgtgaaagtaatgaatgaatcaagtagtagaagggatgttaatgacactatctatggtttggttcagtgtacaccagatttgtctaaacaagaat |
300 |
Q |
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||||||||||||||||| |||||||||||||||| || || ||||||||| || ||||||||||||||||||||||| ||| ||||||| ||||||| |
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| T |
47674104 |
aagagtgtgaaagtaattgatgaatcaagtagtagtagtaatactaatgacacaatttatggtttggttcagtgtacaccggatctgtctaagcaagaat |
47674203 |
T |
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| Q |
301 |
gtactgaatgtttggattcggctttcgggaatttttcaagatggtgtatgaaaggttgtatgtatcttggtc |
372 |
Q |
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||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |
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| T |
47674204 |
gtaatgaatgtttagattcggctttcggaggtttttcaagatggtgtatgaaaggttgtttatatcttggtc |
47674275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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