View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10927_high_6 (Length: 259)
Name: NF10927_high_6
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 6687442 - 6687656
Alignment:
| Q |
33 |
aaccaacttatcatcaccgcaatacaaagacaaactgaaaccctagaacttagtatgaattttcataatttagatagacaataacttggcttccaagata |
132 |
Q |
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| T |
6687442 |
aaccaacttatcatcaccgcaatacaaagacaaactgaaaccctagaacttagtatgaattttcataatttagatagacaataacttggcttccaagata |
6687541 |
T |
|
| Q |
133 |
ttcacttgtaggacgcttactgttctcaaattaactgacctagtaatccgacacgacattcctcaaataaataatcctatttgacacctcaaaactctcc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6687542 |
ttcacttgtaggacgcttactgttctcaaattaactgacctagtaatccgacacgacattcctcaaataaataatcctatttgacacctcaaaactctcc |
6687641 |
T |
|
| Q |
233 |
acttagatactgttc |
247 |
Q |
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||||||||||||||| |
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| T |
6687642 |
acttagatactgttc |
6687656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 53059267 - 53059467
Alignment:
| Q |
37 |
aacttatcatcaccgcaatacaaagacaaactgaaaccctagaacttagtatgaattttcataatttagatagacaataacttggcttccaagatattca |
136 |
Q |
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| T |
53059267 |
aacttatcattgcagcaatacaaagacgaactgaaacccttgaacttaacatg--ttgtc-taattttt-tagacatgaaattagcttccaacatattca |
53059362 |
T |
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| Q |
137 |
cttgtaggacgcttactgttctcaaattaactgacctagtaatccgacacgacattcctcaaataaataatcctatttgacacctcaaaactctccactt |
236 |
Q |
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| T |
53059363 |
cttgtatgacgcttactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaataaataatactatttcactactcaaaactctccactt |
53059462 |
T |
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| Q |
237 |
agata |
241 |
Q |
| |
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|||| |
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| T |
53059463 |
ggata |
53059467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 37418547 - 37418658
Alignment:
| Q |
51 |
gcaatacaaagacaaactgaaaccctagaacttagtatgaattttcataatttagatagacaataacttggcttccaagatattcacttgtaggacgctt |
150 |
Q |
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|||||||||||||||||||||||||| ||||| |||||| ||||| || |||||| || || || |||||||| |||||||| |||||||||||| |
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| T |
37418547 |
gcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttaga----catgaaattagcttccaaaatattcacctgtaggacgctt |
37418642 |
T |
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| Q |
151 |
actgttctcaaattaa |
166 |
Q |
| |
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|||||||||||||||| |
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| T |
37418643 |
actgttctcaaattaa |
37418658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 53068573 - 53068688
Alignment:
| Q |
121 |
gcttccaagatattcacttgtaggacgcttactgttctcaaattaactgacctagtaatccgacacgacattcctcaaataaataatcctatttgacacc |
220 |
Q |
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|||||||| ||||||||||||||||| ||| ||||||||||||||| |||| |||| | ||||||||||||||||||| | |||||| || | |
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| T |
53068573 |
gcttccaacatattcacttgtaggacacttgctgttctcaaattaaaacgcctaacaatcgtcaaagacattcctcaaataaatagtactatttcactac |
53068672 |
T |
|
| Q |
221 |
tcaaaactctccactt |
236 |
Q |
| |
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|||||||||||||||| |
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| T |
53068673 |
tcaaaactctccactt |
53068688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 53340783 - 53340738
Alignment:
| Q |
121 |
gcttccaagatattcacttgtaggacgcttactgttctcaaattaa |
166 |
Q |
| |
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|||||||| |||||||||||||||| | |||||||||| ||||||| |
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|
| T |
53340783 |
gcttccaacatattcacttgtaggaagtttactgttcttaaattaa |
53340738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 53062468 - 53062500
Alignment:
| Q |
130 |
atattcacttgtaggacgcttactgttctcaaa |
162 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
53062468 |
atatttacttgtaggacgcttactgttctcaaa |
53062500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 48828194 - 48828231
Alignment:
| Q |
61 |
gacaaactgaaaccctagaacttagtatgaattttcat |
98 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
48828194 |
gacaaactaaaaccctagaacttagtatgtattttcat |
48828231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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