View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10927_low_1 (Length: 709)
Name: NF10927_low_1
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 672; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 18 - 693
Target Start/End: Original strand, 7416635 - 7417310
Alignment:
| Q |
18 |
atgaatccaaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcatta |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416635 |
atgaatccaaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcatta |
7416734 |
T |
|
| Q |
118 |
tcagtcttttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416735 |
tcagtcttttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttg |
7416834 |
T |
|
| Q |
218 |
aattgaaaagtttatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416835 |
aattgaaaagtttatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattct |
7416934 |
T |
|
| Q |
318 |
acgagcttgacgccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaaga |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416935 |
acgagcttgacgccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaaga |
7417034 |
T |
|
| Q |
418 |
gtagcatcatgggttttgaggaatgatttggctagttctacggtggcgcccacaatgacgggtttcgagccgaaatatagatgtatgatgggtccatatt |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7417035 |
gtagcatcatgggttttgaggaatgatttggctagttctacggtggcgcccacaatgacgggtttcgagccgaaatatagatgcatgatgggtccatatt |
7417134 |
T |
|
| Q |
518 |
tttgagtgaggccatggagggattgatgtgggagggatccgataaggttgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7417135 |
tttgagtgaggccatggagggattgatgtgggagggatccgataaggttgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
7417234 |
T |
|
| Q |
618 |
gtggcggcggaggcggcggctgaagaggaggaggatgacaaatgttgcaaacaatgtgacccaactaggaagttcc |
693 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7417235 |
gtggcggcggaggcggcggctgaagaggaggaggatgacaaatgttgcaaacaatgtgacccaactaggaagttcc |
7417310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 617
Target Start/End: Original strand, 7425621 - 7426220
Alignment:
| Q |
18 |
atgaatccaaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| |
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| T |
7425621 |
atgaatccaaggaataaaatccccaacattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattt |
7425720 |
T |
|
| Q |
118 |
tcagtcttttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttg |
217 |
Q |
| |
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||| |||| ||||| |||||||| || | ||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
7425721 |
tcactcttctccaaatactttttgcccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttg |
7425820 |
T |
|
| Q |
218 |
aattgaaaagtttatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattct |
317 |
Q |
| |
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|||| || |||| ||||| ||| |||| | |||||||||||| |||||||| |||||||| ||||||||| ||||||||| || | ||||||||| | |
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| T |
7425821 |
aattaaatagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcaaggcgttttacactaaacagttctagcagacacatttt |
7425920 |
T |
|
| Q |
318 |
acgagcttgacgccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaaga |
417 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| |||| || |||||||| || || ||||||||||| || ||||||||||| || ||||| |
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|
| T |
7425921 |
acgagcttgttgccaatatgggccatattgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaagg |
7426020 |
T |
|
| Q |
418 |
gtagcatcatgggttttgaggaatgatttggctagttctacggtggcgcccacaatgacgggtttcgagccgaaatatagatgtatgatgggtccatatt |
517 |
Q |
| |
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||| || | ||||||||||| |||||||| |||| | | | ||||||||||| ||||| |||||||| ||| ||| |||||||||||||||| |
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| T |
7426021 |
acagcgtcgtttgttttgaggaaaactttggctatttctgggctcgatcccacaatgacaggtttagagccgaaccataaatgcatgatgggtccatatt |
7426120 |
T |
|
| Q |
518 |
tttgagtgaggccatggagggattgatgtgggagggatccgataaggttgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
617 |
Q |
| |
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||| |||||| || ||||||||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||| |
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|
| T |
7426121 |
ttttagtgagcccgtggagggattgatgtggaagtgatccaataagattgagatttcctattatgggccatgattttgggccaggtggtagattgtattt |
7426220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 690
Target Start/End: Original strand, 7431611 - 7432288
Alignment:
| Q |
19 |
tgaatccaaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||| | |
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| T |
7431611 |
tgaatccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacatttt |
7431710 |
T |
|
| Q |
119 |
cagtcttttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttga |
218 |
Q |
| |
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|| |||| |||||||| || ||||| | |||||| || ||||||| ||| ||||| ||||||||||||||||| |||| |||||| ||||| |||||||| |
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| T |
7431711 |
cactcttctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttga |
7431810 |
T |
|
| Q |
219 |
attgaaaagtttatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattcta |
318 |
Q |
| |
|
|||||| |||||||||| |||| ||| | |||| |||||| |||||||| ||||||||||| | |||| |||||||||| ||| | || ||||| || |
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|
| T |
7431811 |
attgaagagtttatgcagaaaaatatgtaattcttcttttctcatgtactcataagactcgagactttttacactaaacaattccctttgaaacatttta |
7431910 |
T |
|
| Q |
319 |
cgagcttgacgccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgac-aatttgggccggccggcaaga |
417 |
Q |
| |
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|| ||||| | |||||||||| ||| | |||||| |||| || |||||||| |||||||||||||| || | | |||||||| || ||| |||| |
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|
| T |
7431911 |
cgggcttgttgaaaatatggaccgtatgggttccaagtgatgttagagtagttataagttgtgtattttcc-gcaggcaaatttgggtcgtccgacaagg |
7432009 |
T |
|
| Q |
418 |
gtagcatcatgggttttgaggaatgatttggctagttctacggtggcgcccacaatgacgggtttcgagccgaaatatagatgtatgatgggtccatatt |
517 |
Q |
| |
|
| || | ||||| ||||| | |||||||| ||| | | | ||||||||||||| |||| || ||||| ||||| | |||||||| ||||||| |
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|
| T |
7432010 |
acaatgtcgtttgttttaaggaaagctttggctatatctgggctcgagcccacaatgacgagtttggatccgaaccatagacgcatgatggggccatatt |
7432109 |
T |
|
| Q |
518 |
tttgagtgaggccatggagggattgatgtgggagggatccgataaggttgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
617 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7432110 |
ttttagtgagcccatggatggattgatgtgggagggatccgataaggttcatatttcctattataggccatggttttggtcctggtggtagattgtattt |
7432209 |
T |
|
| Q |
618 |
g------tggcggcggaggcggcggctgaagaggaggaggatgacaaatgttgcaaacaatgtgacccaactaggaagt |
690 |
Q |
| |
|
| ||| | || || ||| || |||| ||||| |||||||||||||||| | | ||||| |||||| |||||||| |
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|
| T |
7432210 |
gcggcgatggagacgaagacggtggatgaataggagaaggatgacaaatgttgtacaaaatgtaacccaattaggaagt |
7432288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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