View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10927_low_10 (Length: 238)

Name: NF10927_low_10
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10927_low_10
NF10927_low_10
[»] chr1 (3 HSPs)
chr1 (1-223)||(51031529-51031751)
chr1 (144-222)||(51035828-51035906)
chr1 (144-223)||(51064498-51064577)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 51031529 - 51031751
Alignment:
Q  1 ccttttaacacaacgaacttcactgtttggcacaaaaacacgcaatatcataacaagaactaagaagaaatagaatatagagttggggcagggtatttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51031529 ccttttaacacaacgaacttcactgtttggcacaaaaacacacaatatcataacaagaactaagaggaaatagaatatagagttggggcagggtatttac 51031628  T
Q  101 aaaaattgaaacatttgtagtagttgatgtgaatgttacacaatgcacttactgttttcctttgttgttcttgaaaggtgtggttgatgtttgttgcccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51031629 aaaaattgaaacatttgtagtagttgatgtgaatgttacacaatgcacttactgttttcctttgttgttcttgaaaggtgtggttgatgtttgttgcccc 51031728  T
Q  201 gtaatcaaagaagtagtcacatt 223  Q
    |||||||||||||||||||||||    
T  51031729 gtaatcaaagaagtagtcacatt 51031751  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 51035828 - 51035906
Alignment:
Q  144 tgcacttactgttttcctttgttgttcttgaaaggtgtggttgatgtttgttgccccgtaatcaaagaagtagtcacat 222  Q
    ||||||||||||||||||||||||| | ||||||  ||||||||| ||||||||||||| |||||||||||||||||||    
T  51035828 tgcacttactgttttcctttgttgtccatgaaagacgtggttgatatttgttgccccgttatcaaagaagtagtcacat 51035906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 51064498 - 51064577
Alignment:
Q  144 tgcacttactgttttcctttgttgttcttgaaaggtgtggttgatgtttgttgccccgtaatcaaagaagtagtcacatt 223  Q
    ||||||||||  ||||||||||||| | ||||||  || |||||||| ||||||||| ||| ||||||||||||||||||    
T  51064498 tgcacttactactttcctttgttgtccatgaaagacgtagttgatgtctgttgccccataaccaaagaagtagtcacatt 51064577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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