View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10927_low_11 (Length: 235)
Name: NF10927_low_11
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 42600339 - 42600542
Alignment:
| Q |
13 |
gagatgaaggacgtggagtgatgtatgcaagcaacaatgacttgtatagaaccaacgctgccagctggcatgattctctgcaagcgtggatggcaccgga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42600339 |
gagatgaaggacgtggagtgatgtatgcaagcaacaatgacttgtatagaaccaacgctgccagctggcatgattctctgcaagcgtggatggcaccgga |
42600438 |
T |
|
| Q |
113 |
ggcaccgaaagccgaggagttgccggagatttgtcgtaaggagatggttgaatgggattttcatgcggccggagttgctgaagtggtttttgagttgctt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42600439 |
ggcaccgaaagccgaggagttgccggagatttgtcgtaaggagatggttgaatgggattttcatgcggccggagttgctgaagtggtttttgagttgctc |
42600538 |
T |
|
| Q |
213 |
tctg |
216 |
Q |
| |
|
|||| |
|
|
| T |
42600539 |
tctg |
42600542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University