View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10927_low_5 (Length: 358)
Name: NF10927_low_5
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_low_5 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 31034612 - 31034352
Alignment:
| Q |
10 |
agtgagaagaataagcttacattaatcatttaggagcttcaactttgctcttcttccaaatcacattgaaatgattttgatacaaggattagtacctgat |
109 |
Q |
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| T |
31034612 |
agtgaaaagaataagcttacattaatcatttaggagcttcaactttgctcttcttccaaatcacattgaaatgattttgatacaaggattagtacctgat |
31034513 |
T |
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| Q |
110 |
aagttggtgtgtgtaagattgtgagctacaacatatagcatcaatttttaacttatgtgatttgttggtttgtttgaatttaatcttttctttatttaat |
209 |
Q |
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| T |
31034512 |
aagatggtgtgtgtaagattgtgagctacaacatatagcatcaatttttaacttatgtgatttgttggtttgtttgaatttaatcttttctttatttaat |
31034413 |
T |
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| Q |
210 |
ccccgacaatgttttgtattaatcccaatatgtgtctactcgttgtgtatgcaaagttgtt |
270 |
Q |
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| T |
31034412 |
ccccgacaatgttttgtattaatcccaatatgtgtctactcgttgtgcatgcaaagttgtt |
31034352 |
T |
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Target: scaffold0016 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 30478 - 30568
Alignment:
| Q |
252 |
ttgtgtatgcaaagttgttataacatactggttttgtcttatattaagataaatttcattactcatgaatcaggatgtatgtcgtggtttt |
342 |
Q |
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| T |
30478 |
ttgtgcatgcaaagttgttataacatactggttttgtcctatattaagctaaatttctttactcaggaatcaagatgtatgtcgtggtttt |
30568 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 38824497 - 38824544
Alignment:
| Q |
10 |
agtgagaagaataagcttacattaatcatttaggagcttcaactttgc |
57 |
Q |
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| T |
38824497 |
agtgaaaagaataagcttacattaatcattttagagcttcaactttgc |
38824544 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 30366495 - 30366542
Alignment:
| Q |
10 |
agtgagaagaataagcttacattaatcatttaggagcttcaactttgc |
57 |
Q |
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| T |
30366495 |
agtgaaaagaataagcttacattaatcatttcagagcttcaactttgc |
30366542 |
T |
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