View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10927_low_6 (Length: 281)
Name: NF10927_low_6
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 24539900 - 24540164
Alignment:
| Q |
1 |
tacagaaacacccttagacattgattgttttacaaacttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtactttaggtgcacta |
100 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24539900 |
tacataaacacccttagacattgatcgttttacaagcttaagaagagccccaataacaccaccatgaagatttgaaggttttagtactttaggtgcacta |
24539999 |
T |
|
| Q |
101 |
tccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttggctttaaggacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24540000 |
tccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccaatataaaagtaacctttcttattcgtcttggctttaaggacca |
24540099 |
T |
|
| Q |
201 |
acttgtatttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaacataa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24540100 |
acttgtatttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaacataa |
24540164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 20965116 - 20964861
Alignment:
| Q |
11 |
cccttagacattgattgttttacaaacttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtactttaggtgcactatccaaaacaa |
110 |
Q |
| |
|
|||||||||| |||| |||| || |||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||| | |||| ||||||| |
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| T |
20965116 |
cccttagacactgatcgtttcactggcttaagaagagccccagtaagaccgccatgaagatttgaaggttttagtgcttttggtgaattatctaaaacaa |
20965017 |
T |
|
| Q |
111 |
cgttgcaatggcgagttgaataacctgtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttggctttaaggaccaacttgtattt |
210 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||| || ||| |||| |||||||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
20965016 |
cgttgcaatggcgagttgaataacctacaatgttctttgggccaccaatatagaagtaacctttcttatcagtcttggctttaaggaccaacttatgttt |
20964917 |
T |
|
| Q |
211 |
ggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaacataat |
266 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20964916 |
ggcgttgttgcattggagcttcacaatggcaccttcaattttcaaaacaacataat |
20964861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 3174957 - 3175175
Alignment:
| Q |
47 |
gccccagtaacaccaccatgaagatttgaaggttttagtactttaggtgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttct |
146 |
Q |
| |
|
|||||| ||| |||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
3174957 |
gccccactaagaccaccatgaagatttgagggttttagtacttttggtgcagtatctaaaacaacgttgcaatgacgagttgaataacctgcaatgttct |
3175056 |
T |
|
| Q |
147 |
ttggacctccagtataaaagtaacctttcttattcgtcttggctttaaggaccaacttgtatttggtgttgttgcattggagcttaacaatggcaccttc |
246 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||||| |
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|
| T |
3175057 |
ttgggcctccaatatagaagtaacctttcttatcagtcttggctttaaggaccaacttgtgtttggcgttgtcgcattggagcttcacaacggcaccttc |
3175156 |
T |
|
| Q |
247 |
aattttcaaaacaacataa |
265 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
3175157 |
aattttcaaaacaaaataa |
3175175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 41522242 - 41522502
Alignment:
| Q |
5 |
gaaacacccttagacattgattgttttacaaacttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtactttaggtgcactatcca |
104 |
Q |
| |
|
||||||| |||||||| |||||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||| | || | ||||||||||| |
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|
| T |
41522242 |
gaaacactcttagacaccgattgtttcacaggcttaagaagagctccagtaaaaccaccatgaagatttgagggttttagtccatttgatgcactatcca |
41522341 |
T |
|
| Q |
105 |
aaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttggctttaaggaccaactt |
204 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| ||||| ||||| |||| |||||||| ||||||| ||||||||||||||||||||| | |
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|
| T |
41522342 |
aaacaacgttgcaatggcgagttatgcaactcgtaatgttttttggggctccaatatagaagtaacccttcttatcagtcttggctttaaggaccaacat |
41522441 |
T |
|
| Q |
205 |
gtatttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaacataa |
265 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
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|
| T |
41522442 |
atatttgtagttgttgcattggagcttcacaacggcaccttcaattttcaaaacaaaataa |
41522502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 14674235 - 14674434
Alignment:
| Q |
58 |
accaccatgaagatttgaaggttttagtactttaggtgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctcca |
157 |
Q |
| |
|
|||||||||||||||||| ||||||||| | || |||||||| ||||||||||| |||||||||| | || ||| | | ||||||||||| || |||| |
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|
| T |
14674235 |
accaccatgaagatttgatggttttagtccatttggtgcactctccaaaacaacattgcaatggccggatgcatagctagaaatgttctttgaacttcca |
14674334 |
T |
|
| Q |
158 |
gtataaaagtaacctttcttattcgtcttggctttaaggaccaacttgtatttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaa |
257 |
Q |
| |
|
|||| | ||||||| |||||| || |||||||||||||| ||||||||||| | |||| |||||| | ||| |||| |||||||||||||||||||| |
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|
| T |
14674335 |
atatagatataaccttccttattagttttggctttaaggacgaacttgtatttagcattgtggcattgaaacttcacaacggcaccttcaattttcaaaa |
14674434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 248
Target Start/End: Complemental strand, 16603265 - 16603054
Alignment:
| Q |
37 |
cttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtactttaggtgcactatccaaaacaacgttgcaatggcgagttgaataacct |
136 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||| || |||| | | || |||||||||||||| ||||| || || | | ||| || | ||| | |
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|
| T |
16603265 |
cttaagaacagcaccagtgacaccaccatgaagatttgagggctttaatccatttggtgcactatccaatacaacattacacttgtgagctgcaaaactt |
16603166 |
T |
|
| Q |
137 |
gtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttggctttaaggaccaacttgtatttggtgttgttgcattggagcttaacaa |
236 |
Q |
| |
|
| |||| ||||| ||| |||| || ||||| ||||||| |||||| |||| | |||| |||| |||||||||||||||||||||||| |||| |
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|
| T |
16603165 |
gagatgtcctttgagcctttgatatagaaataaccgttcttatcggtcttgccttttcgaaccacgttgtgtttggtgttgttgcattggagcttcacaa |
16603066 |
T |
|
| Q |
237 |
tggcaccttcaa |
248 |
Q |
| |
|
||||||||||| |
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|
| T |
16603065 |
cggcaccttcaa |
16603054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 25223295 - 25223234
Alignment:
| Q |
198 |
ccaacttgtatttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaa |
260 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
25223295 |
ccaacttgtacttggtgttgttgcattggagcttcacaacagcaccttcaa-tttcaaaacaa |
25223234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 16592546 - 16592501
Alignment:
| Q |
203 |
ttgtatttggtgttgttgcattggagcttaacaatggcaccttcaa |
248 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16592546 |
ttgtgtttggtgttgttgcattggagcttcacaacggcaccttcaa |
16592501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 35334720 - 35334776
Alignment:
| Q |
208 |
tttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaacataa |
265 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||||| |||||||||| ||||| |
|
|
| T |
35334720 |
tttggtgttgttgcatcggagcttcacaacggcaccttcaa-tttcaaaacaccataa |
35334776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 5342802 - 5342741
Alignment:
| Q |
198 |
ccaacttgtatttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaa |
260 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
5342802 |
ccaacttgtacttggtactattgcattggagcttcacaacggcaccttcaa-tttcaaaacaa |
5342741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 38541821 - 38541882
Alignment:
| Q |
198 |
ccaacttgtatttggtgttgttgcattggagcttaacaatggcaccttcaattttcaaaacaa |
260 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||| || |||||||| ||||||||||| |
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|
| T |
38541821 |
ccaatttgtacttggtgttgttgcattggagcttcacaacgggaccttcaa-tttcaaaacaa |
38541882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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