View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10927_low_8 (Length: 247)
Name: NF10927_low_8
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_low_8 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 51031381 - 51031516
Alignment:
| Q |
109 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagcaacaacctttgacatgta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51031381 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcc---tcaatagcaacaacctttgacatgta |
51031477 |
T |
|
| Q |
209 |
cctaatggtgccactgggaagttcattggcaagggcttc |
247 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51031478 |
cctaatggtgccattgggaagttcattggcaagggcttc |
51031516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 51064129 - 51064264
Alignment:
| Q |
109 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagcaacaacctttgacatgta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51064129 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcc---tcaatagcaacaacctttgacatgta |
51064225 |
T |
|
| Q |
209 |
cctaatggtgccactgggaagttcattggcaagggcttc |
247 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
51064226 |
cctaatggtgccattgggaagttcatttgcaagggcttc |
51064264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 51035455 - 51035707
Alignment:
| Q |
11 |
cacagagtttactccatcacatccaatcaataccttttccacaaattgcaaacaataattattttaattagacttaacaacttgaactctaaatggaa-- |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
51035455 |
cacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagac-caacaacttgaactctcaatggaagt |
51035553 |
T |
|
| Q |
109 |
------------------gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagc |
190 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||| ||||| || || || |||||| || | |||||| |
|
|
| T |
51035554 |
taatgtcttacatattttgttgtttaattaccttagttttgatggttgttccatcagcaagatggagtatcttagacaagccagat---tcttgaatagc |
51035650 |
T |
|
| Q |
191 |
aacaacctttgacatgtacctaatggtgccactgggaagttcattggcaagggcttc |
247 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51035651 |
aacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggcttc |
51035707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 51031214 - 51031313
Alignment:
| Q |
11 |
cacagagtttactccatcacatccaatcaataccttttccacaaattgcaaacaataattattttaattagacttaacaacttgaactctaaatggaagt |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
51031214 |
cacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagac-taacaacttgaactctcaaaggaagt |
51031312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 51063966 - 51064065
Alignment:
| Q |
11 |
cacagagtttactccatcacatccaatcaataccttttccacaaattgcaaacaataattattttaattagacttaacaacttgaactctaaatggaagt |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
51063966 |
cacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagac-taacaacttgaactctcaaaggaagt |
51064064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 51069541 - 51069667
Alignment:
| Q |
118 |
ttaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagcaacaacctttgacatgtacctaatggt |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||| || |||||||| || |||||||||||||||||||| |
|
|
| T |
51069541 |
ttacctttgttttgatggttgttccatcaacaagatgtagtattttaaagaatccagattcc---tctatagcaacgacttttgacatgtacctaatggt |
51069637 |
T |
|
| Q |
218 |
gccactgggaagttcattggcaagggcttc |
247 |
Q |
| |
|
|| | | |||||||||||| |||||||||| |
|
|
| T |
51069638 |
gctatttggaagttcattgccaagggcttc |
51069667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 40616650 - 40616524
Alignment:
| Q |
118 |
ttaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagcaacaacctttgacatgtacctaatggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||| || | ||||||||||||| | ||||||||||||||||||| ||||||||| || |
|
|
| T |
40616650 |
ttaccttggttttgatggttgttccatcggcaagatggagtatcttaaagaaaccagattcctga---atagcaacaacctttgacaagtacctaatagt |
40616554 |
T |
|
| Q |
218 |
gccactgggaagttcattggcaagggcttc |
247 |
Q |
| |
|
|||||| ||||| ||| | ||||||||||| |
|
|
| T |
40616553 |
gccacttggaagctcactagcaagggcttc |
40616524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University