View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10927_low_9 (Length: 239)
Name: NF10927_low_9
Description: NF10927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10927_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11802477 - 11802255
Alignment:
| Q |
1 |
taaagtctccgaccacacactcatatgtttctgaagtgnnnnnnnaacatagacatttatttaatctctccataaacatatataaacttacaaattcgtg |
100 |
Q |
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| T |
11802477 |
taaagtctccaaccacacactcatatgtttctgaagtgtttttttaacatagacatttatttgatctctccataaacatatataaacttacaaattcgtg |
11802378 |
T |
|
| Q |
101 |
aagaaattatacgttaaatcaataaaacttatctcgactaattaatttttgtacaaataaggcattaactaatttatattgttgtaatttttatatacag |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11802377 |
aagaaattatacgttaaatcaaaaaaacttatctcgactaattgatttttgtacaaataaggcattaactaatttatattgttgtaatttttatatacag |
11802278 |
T |
|
| Q |
201 |
gtaatcaacgaaatgttacgtgt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
11802277 |
gtaatcaacgaaatgttacgtgt |
11802255 |
T |
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