View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10928_high_1_N (Length: 622)
Name: NF10928_high_1_N
Description: NF10928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10928_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 14 - 593
Target Start/End: Original strand, 34899398 - 34899975
Alignment:
| Q |
14 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
113 |
Q |
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| T |
34899398 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
34899497 |
T |
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| Q |
114 |
aatttttgacttcttcaacnnnnnnnntctatgaagacgtgggtagattatacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaa |
213 |
Q |
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| T |
34899498 |
aatttttgacttcttcaacaaaaaaaatctatgaagaagtgtct-gctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaa |
34899596 |
T |
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| Q |
214 |
aatgtgtctctaaaaatgttcttagttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagc |
313 |
Q |
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| T |
34899597 |
aatgtgtctctaaaaatgttcttagttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagc |
34899695 |
T |
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| Q |
314 |
atatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaaga |
413 |
Q |
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| T |
34899696 |
atatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaaga |
34899795 |
T |
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| Q |
414 |
tacatacctttcatgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaa |
513 |
Q |
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| T |
34899796 |
tacatacctttcatgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaa |
34899895 |
T |
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| Q |
514 |
atagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
593 |
Q |
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| T |
34899896 |
atagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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