View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10928_high_2 (Length: 509)
Name: NF10928_high_2
Description: NF10928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10928_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 211 - 469
Target Start/End: Original strand, 23386246 - 23386505
Alignment:
| Q |
211 |
cgagcttgattctattctatatctcaattcaatccttttcaatgagaataaaatacaatcaaaataaaaccaatcaataaactaattaattttcagttaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
23386246 |
cgagcttgattctattctatatctcaattcaatcctgcccaatgagaataaaatacaatcaaaataaaaccaatcattaaactaattaatttttagttaa |
23386345 |
T |
|
| Q |
311 |
atgaatagaacaccaatcggttcggtctgatttttaaaacactaatcccaaaaacatcaaagattttggcatcactgtccatatcatagttgtggacc-t |
409 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
23386346 |
atgaatagaacaccgatcggttcggtctgatttttaaaacattagtcccaaaaacatcaaagattttagcatcactgtccatatcatagttgtggacctt |
23386445 |
T |
|
| Q |
410 |
tttttctaaattgtgtttcctagtggaaaagaagtggacttctaattttgtaaaggtggg |
469 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23386446 |
tttttctaaattgtgtttattagtggaaaagaagtggacttctaattttgtaaaggtggg |
23386505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 23386047 - 23386193
Alignment:
| Q |
12 |
gaagaatattgcggtcaaatgcaaatatagtataacattaatctggattatgtttcgatagtattatgtttcaaataacatatcaaagattgaacatgtg |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23386047 |
gaagaaaattgcggtcaaatgcaaatatagtataacattaatctggattatatttcgatagtattatgtttcaaataacatatcaaagattgaacatgtg |
23386146 |
T |
|
| Q |
112 |
agacttgttgatcaatcctcaattgattcaaccatgtttgaagtgga |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23386147 |
agacttgttgatcaatcctcaattgattcaaccatgtttgaagtgga |
23386193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University