View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10928_high_4 (Length: 431)
Name: NF10928_high_4
Description: NF10928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10928_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 402
Target Start/End: Complemental strand, 32707096 - 32706698
Alignment:
| Q |
4 |
atatcaatcattatattgtacagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
103 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32707096 |
atatcaatcattatattgtgcagcagcagatgtaaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
32706997 |
T |
|
| Q |
104 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706996 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatc |
32706897 |
T |
|
| Q |
204 |
tgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtcgttacctgaaatcgacgca |
303 |
Q |
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| T |
32706896 |
tgggatatttggaagtgaaattgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtcgttagctgaaatcgacgca |
32706797 |
T |
|
| Q |
304 |
ttctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
402 |
Q |
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| T |
32706796 |
ttctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
32706698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
326 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
378 |
Q |
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| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 3001891 - 3001615
Alignment:
| Q |
8 |
caatcattatattgtacagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggca-caatttag |
106 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
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| T |
3001891 |
caatcattatattgtgcagcagcagatgccaaagcacattatattcatattcataaccaacacatgctagtaaaatatttccgtagtggcaacaatttag |
3001792 |
T |
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| Q |
107 |
acattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctgg |
206 |
Q |
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| T |
3001791 |
acattgcacaaaaaactgcagtagcttacgtattgagcatcttgaaagcagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatgtgg |
3001692 |
T |
|
| Q |
207 |
gatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
283 |
Q |
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| T |
3001691 |
gatatttggaagtgaaattgatgcaccacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
302 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
376 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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