View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10928_high_5 (Length: 376)
Name: NF10928_high_5
Description: NF10928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10928_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 8936530 - 8936175
Alignment:
| Q |
19 |
tgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataact |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936530 |
tgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaatgttaactctgttgtcgggtaaatactatgtgaaatcaatcaactacaataact |
8936431 |
T |
|
| Q |
119 |
acacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttatatctt |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8936430 |
acacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctcactattacttatacaattataatttcagcagctcttatatcta |
8936331 |
T |
|
| Q |
219 |
caattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcct |
318 |
Q |
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| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936330 |
cgattctgttgatccatatcaaacttaccagagaagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcct |
8936231 |
T |
|
| Q |
319 |
acatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgag |
374 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8936230 |
acaacattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgag |
8936175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 8960051 - 8959714
Alignment:
| Q |
19 |
tgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataact |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8960051 |
tgtggtgatccgaggtacgagttatcctgcgaaaacaacatcacaaccttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataact |
8959952 |
T |
|
| Q |
119 |
acacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttatatctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8959951 |
acacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttatatcta |
8959852 |
T |
|
| Q |
219 |
caattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcct |
318 |
Q |
| |
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| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || || || |||||||||||||| |
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| T |
8959851 |
cgattctgttgatccatatcaaacttaccagagtagaatagttgatactactagatataaatattcaccagctcttactttgg----------------- |
8959769 |
T |
|
| Q |
319 |
acatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgag |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8959768 |
-catcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgag |
8959714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 8924893 - 8924552
Alignment:
| Q |
15 |
aacctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaat |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |
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| T |
8924893 |
aacctgtggtgatccgaggtacgagttatcctgcgaaaacaacataacaactttaactctattgtcgagtaaatactatgtgaaatcaatcaactacaat |
8924794 |
T |
|
| Q |
115 |
aactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttata |
214 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
8924793 |
aactacacaatcagaatagttgatcccggaattgaagagggtgattgctcctcctttcctcgctattacttatacaattataatttcagcagctcttata |
8924694 |
T |
|
| Q |
215 |
tcttcaattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaata |
314 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| || || || |||||||||||||| |
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|
| T |
8924693 |
tcttcgattctgttgatccatatcaaacataccagagcagaatagttgatactactagatataaatattcaccagctcttactttgg------------- |
8924607 |
T |
|
| Q |
315 |
tcctacatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgag |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8924606 |
-----catcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgag |
8924552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 9306840 - 9306999
Alignment:
| Q |
22 |
ggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataactaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
9306840 |
ggtgatccgaggtatgagttatcctgcgaaaacaacatcacaacgttaactttgttttcaggtaaatactatgtgaaatcaatcaactacagaaactact |
9306939 |
T |
|
| Q |
122 |
caattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt |
181 |
Q |
| |
|
|||| | ||||||||| ||||||||||| |||||||||||| |||| |||| ||||| |
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| T |
9306940 |
caatgagagtagttgatcttggaattcaagaaggtgattgctcctccatgcctcgctatt |
9306999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 9475290 - 9475450
Alignment:
| Q |
15 |
aacctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaat |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||| | |||||||| ||| ||||||| |||||||||||| || |
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| T |
9475290 |
aacctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcgggtaactacaatgtgaagtcaatcaactacgat |
9475389 |
T |
|
| Q |
115 |
aactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc |
175 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||||| |||||||| | ||||||||| |
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|
| T |
9475390 |
aactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctc |
9475450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 9245056 - 9245219
Alignment:
| Q |
18 |
ctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataac |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||| |||||||| ||||||||||| ||||||||||||| ||| |
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| T |
9245056 |
ctgtggtgatccgaagtatgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaagtactatgtgaaggcaatcaactacaacaac |
9245155 |
T |
|
| Q |
118 |
tacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt |
181 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| ||||||| || |||||| ||||| |
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|
| T |
9245156 |
tacacaattttgttagttgatcccggaattgaagagggtagttgctcctcccttcctcgctatt |
9245219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 9335669 - 9335503
Alignment:
| Q |
15 |
aacctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaat |
114 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||||||||||||| ||| | |||||| |||| || ||||||||||||||| | ||||||||||| |
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|
| T |
9335669 |
aacctgtggtgatccaaagtacgagttatcctgcgaaaacaacatcacagcgttaactctgttttcaggtaaatactatgtgcaggaaatcaactacata |
9335570 |
T |
|
| Q |
115 |
aactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt |
181 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| ||||||| |||| ||||||||| ||||| |
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|
| T |
9335569 |
aactacacaattcggttagttgatccaggaattgaagaaggtgattactcctccattcctcgctatt |
9335503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 8946028 - 8945879
Alignment:
| Q |
15 |
aacctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaat |
114 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| ||||| |||| |||| || | || ||||||||| |||| |||||||||||||||||| |
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|
| T |
8946028 |
aacctgcggtgatccgaggtacgagttatcctgcgaaaaaaacatcacaatgttaaagctgctttctggtaaataccatgtaaaatcaatcaactacaat |
8945929 |
T |
|
| Q |
115 |
aactacacaattcggttagttgatcccggaattcaagagggtgattgctc |
164 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
8945928 |
aactacacaattcggttagttgatcctggaataaaagaaggtgattgctc |
8945879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 9359404 - 9359247
Alignment:
| Q |
18 |
ctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataac |
117 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| || |||||| |||| || ||||||||||||||| | |||||||||| || |
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| T |
9359404 |
ctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcaccgtgttaactctgttttcaggtaaatactatgtgcaggaaatcaactacgtaaat |
9359305 |
T |
|
| Q |
118 |
tacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc |
175 |
Q |
| |
|
|||||||||||| |||||||||| | |||| |||||||| |||||||| ||||||||| |
|
|
| T |
9359304 |
tacacaattcggctagttgatccagtaattgaagagggtaattgctcctccattcctc |
9359247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 9168558 - 9168398
Alignment:
| Q |
18 |
ctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataac |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| ||||| ||| | |||| | ||||||||||||||||||||||||||||||||| ||| |
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| T |
9168558 |
ctgtggtgatccgaggtacgagttatcctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaac |
9168459 |
T |
|
| Q |
118 |
tacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt |
181 |
Q |
| |
|
|||||||| | |||||||||| ||||| |||| |||||||| ||||||||||| ||||| |
|
|
| T |
9168458 |
tacacaatcagagtagttgatcctggaatagaagaaggtgattg---caccattcctcgctatt |
9168398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 15912782 - 15912941
Alignment:
| Q |
16 |
acctgtggtgatccgaggtatgagttatcctgcgaaaacaacataacaactttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaata |
115 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||||||| ||||| |||| | |||| || ||||| ||||||||| ||||||||| || | |
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|
| T |
15912782 |
acctgtggggatccgagctacgagttatcctgcgaaaacaacatcacaaccttaaatctgttttcaggtaagtactatgtgttggaaatcaactataaaa |
15912881 |
T |
|
| Q |
116 |
actacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc |
175 |
Q |
| |
|
||||||||||| ||||||||||| |||| | |||||||||||||||||| ||||||||| |
|
|
| T |
15912882 |
actacacaattaggttagttgatgccgggttgcaagagggtgattgctcctccattcctc |
15912941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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