View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10928_high_9 (Length: 326)
Name: NF10928_high_9
Description: NF10928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10928_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 47424402 - 47424719
Alignment:
| Q |
1 |
ctacttcctaattacatccatccctatactttcatctgtggtagaccttcagagttctagtgttcgcatcgttaatgttatctctcgaacagttgctgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47424402 |
ctacttcctaattacatccatccctatactttcatctgtggtagaccttcagagttctagtgttcgcatcgttaatgttatctctcgaacagttgctgct |
47424501 |
T |
|
| Q |
101 |
gaacctaggttgcctcttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcagcgaccttacgaaaaatcatctacaacactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47424502 |
gaacctaggttgcctcttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcaacgaccttacgaaaaatcatctacaacactg |
47424601 |
T |
|
| Q |
201 |
cagaaaccatctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgat |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47424602 |
cagaaaccatctaatctacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaattgat |
47424701 |
T |
|
| Q |
301 |
gtttgggtacttcatctc |
318 |
Q |
| |
|
|||||| |||||||||| |
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| T |
47424702 |
gtttggacacttcatctc |
47424719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 47391042 - 47391152
Alignment:
| Q |
208 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttggg |
307 |
Q |
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|||||| ||| | ||||||||||||||||| ||||||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | ||| || |
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| T |
47391042 |
catctattctgcctacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttagg |
47391141 |
T |
|
| Q |
308 |
tacttcatctc |
318 |
Q |
| |
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|| |||||||| |
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| T |
47391142 |
tatttcatctc |
47391152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 47419405 - 47419515
Alignment:
| Q |
208 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttggg |
307 |
Q |
| |
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|||||| ||||| ||||||||||||||||| || |||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | |||||| |
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| T |
47419405 |
catctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttggg |
47419504 |
T |
|
| Q |
308 |
tacttcatctc |
318 |
Q |
| |
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| |||||||| |
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| T |
47419505 |
catttcatctc |
47419515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 47421873 - 47421987
Alignment:
| Q |
204 |
aaaccatctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtt |
303 |
Q |
| |
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|||| ||||| ||||| ||||||||||||||||| || |||||| |||||||| | | ||||||||| |||||||||||| ||||||| || | || |
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| T |
47421873 |
aaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctt |
47421972 |
T |
|
| Q |
304 |
tgggtacttcatctc |
318 |
Q |
| |
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| |||| |||||||| |
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| T |
47421973 |
tcggtatttcatctc |
47421987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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