View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10928_low_1 (Length: 427)
Name: NF10928_low_1
Description: NF10928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10928_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 31809065 - 31808675
Alignment:
| Q |
18 |
atgaaatcaatgtagtataattcagttgactatactttcttatttattggtgccacaactaaagcatataagactgatattgatgtgaaacttttcactt |
117 |
Q |
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| T |
31809065 |
atgaaatcaatgtagtataattcagttgactatactctcttatttattggtgccacaactaaagcatataagactgatattgatgtgaaacttttcactt |
31808966 |
T |
|
| Q |
118 |
cattgtggggggtagaaaaatgaggttgtttttcactcaaattttgtccttgatcatttcattcaactagctagcaaccaggcaaaagatcttgtcaatg |
217 |
Q |
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| T |
31808965 |
cattgtggggggtagaaaaatgaggttgtttttcactcaaattttgtccttgatcatttcattcaactagctagcaaccaggcaaaagatcttgtcaatg |
31808866 |
T |
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| Q |
218 |
tctttcatatatatatcatattattattttcaaagctttcatcattgnnnnnnnctttcaattaataataagttcaatgactgtttcgttttgtattctt |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31808865 |
tctttcatat--atatcatattattattttcaaagctttcatcattg-ttttttctttcaattaataataaggtcaatgactgtttcgttttgtattctt |
31808769 |
T |
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| Q |
318 |
ttaccatatatgagaaaatgtcacaaaattatattgcagagagaagacaacaaggacaatgtctactactttggatcacttgccccaaattatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31808768 |
ttaccatatatgagaaaatgtcacaaaattatattgcagagagaagacaacaaggacaatgtctactactttggatcacttgccccaaattatt |
31808675 |
T |
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