View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10929_high_3 (Length: 334)
Name: NF10929_high_3
Description: NF10929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10929_high_3 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 163 - 328
Target Start/End: Original strand, 48717903 - 48718068
Alignment:
| Q |
163 |
acaaaatgtgtacaaaatggagcggtcaacatatgattttccatttggcatctactaaaccaatgtttgttctttactacagaannnnnnnn--gtttta |
260 |
Q |
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| T |
48717903 |
acaaagtgtgtacaaaatgaagcggtcaacatat-atttcccatttggcatctactaaaccaatgtttgttctttactaaagaattttttttttgtttta |
48718001 |
T |
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| Q |
261 |
gtttggattaacatctagcccataaaagcaccttaattaaaataaatttataaacacattcatctcac |
328 |
Q |
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| T |
48718002 |
gtttggattaacatctggcccataaa-gcaccttaattaaaataaatttataaacacattcatctcac |
48718068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48716922 - 48716996
Alignment:
| Q |
1 |
ccataaactttgggttgcacttgagtgacatataatatttggtgacattggtcaaccataatatcacaagtgtat |
75 |
Q |
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| T |
48716922 |
ccataaactttgggttgcacttgagtgacatatagcacttggtgacattggtcaaccataatatcacaagcgtat |
48716996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 48717030 - 48717073
Alignment:
| Q |
109 |
agaagaaagccatttgtaagattgtggtcggtcaatgtcatcaa |
152 |
Q |
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| T |
48717030 |
agaagaaagccacttgtaagattgtggtcggtcaatatcatcaa |
48717073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 17547091 - 17547053
Alignment:
| Q |
37 |
atttggtgacattggtcaaccataatatcacaagtgtat |
75 |
Q |
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| T |
17547091 |
atttggtgacattggtcaaccataatgtcacaagtgtat |
17547053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 26524 - 26560
Alignment:
| Q |
39 |
ttggtgacattggtcaaccataatatcacaagtgtat |
75 |
Q |
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| T |
26524 |
ttggtgacattggtcaaacacaatatcacaagtgtat |
26560 |
T |
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