View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10929_low_1 (Length: 467)
Name: NF10929_low_1
Description: NF10929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10929_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 174 - 448
Target Start/End: Original strand, 43870386 - 43870660
Alignment:
| Q |
174 |
ctttctaagtttctcgctcccagttttttgtgggctcgctaagtgaatcattgattgcttcacttctttgctcttttaagttcaagcatctcttgagctt |
273 |
Q |
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| T |
43870386 |
ctttctaagtttctcgctcccagttttttgtgggctcgctaagtgaatcattgattgcttcacttctttgctcttttcagttcaagcatctcttgagctt |
43870485 |
T |
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| Q |
274 |
taatacctatgaaaacatgggaaacaggtcatagtattgattcatgtacttgaaacctaaccaaatgatatttacaataaattaagagatttccattcga |
373 |
Q |
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| T |
43870486 |
taatacctatgaaaacatgggaaacaggtcatagtattgattcatgtatttgaaacctaaccaaatgatatttacaataaattaagagatttccattcga |
43870585 |
T |
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| Q |
374 |
ttatttgcgcaacaagttaataatagacgtaataaaataggcgaaatcaagtaaagttgacacttatcaccacat |
448 |
Q |
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| T |
43870586 |
ttatttgcgcaacaagttaataatagacgtaataaaataggcgaaatcaagtaaagttgacacttatcaccacat |
43870660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 34098836 - 34098945
Alignment:
| Q |
19 |
aagaactgaagaatgactctgaaattcatagacacaatcacaggttaacaaaaatacaatgtgctatgataaagtgagaaaatttaactagacagcacag |
118 |
Q |
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| T |
34098836 |
aagaactgaagaatgactctgaaattcatagacacaatcacaggttaacaaaaatacaatgtgctatgataaagtgagaaaatttaactagacagcacag |
34098935 |
T |
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| Q |
119 |
gcatcattgt |
128 |
Q |
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| T |
34098936 |
gcatcattgt |
34098945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 34098960 - 34098990
Alignment:
| Q |
147 |
tagatagcatgttgcactttcacctatcttt |
177 |
Q |
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| T |
34098960 |
tagatagcatgttgcactttcacctatcttt |
34098990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 442
Target Start/End: Original strand, 44560825 - 44561042
Alignment:
| Q |
228 |
ttgcttcacttctttgctcttttaagttcaagcatctcttgagcttt-aatacctatgaaaacatgggaaacaggtcatagtattgattcatgtacttga |
326 |
Q |
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|||| ||||||||||| || |||||||| | |||||| ||||||||| ||||| ||| |||||| |||| | |||||||| |||||||||| ||||||| |
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| T |
44560825 |
ttgcatcacttctttgttcctttaagttgatgcatcttttgagcttttaatacttatcaaaacacgggagataggtcataaaattgattcatatacttga |
44560924 |
T |
|
| Q |
327 |
aacctaaccaaatg--atatttacaataaattaagagatttccattcgattatttgcgcaacaagttaataatagacgtaataaaataggcgaaatcaag |
424 |
Q |
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| T |
44560925 |
aacctaactagttgatatatttatgagaaatttagagatttttattgtattacttgcaaaacaagttaataaatgccctaattaaataggcaaaaccaag |
44561024 |
T |
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| Q |
425 |
taaagttgacacttatca |
442 |
Q |
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| T |
44561025 |
taaattaggcacttatca |
44561042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 34552602 - 34552687
Alignment:
| Q |
233 |
tcacttctttgctcttttaagttcaagcatctcttgagctttaatacctatgaaaacatgggaaacaggtcatagtattgattcat |
318 |
Q |
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| T |
34552602 |
tcacttctttgttcttttaagctccaacatctctcgagttttaattcctatcaaaatatggtgaataggtcataatattgattcat |
34552687 |
T |
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