View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10929_low_4 (Length: 272)
Name: NF10929_low_4
Description: NF10929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10929_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9587381 - 9587644
Alignment:
| Q |
1 |
aagtctacttgaaatatcatatgacaaccaattaatggtgccactcacaaatacacctggattatcactgatgt------atgggaagtcttggatcctc |
94 |
Q |
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| T |
9587381 |
aagtctacttgaaatatcatatgacaaccaattaatggtgccactcacaaatacacctggattatcactgatgtgagaatatgggaagtcttggatcctc |
9587480 |
T |
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| Q |
95 |
ctccaagtattggtacccaaagtataaacactaactctatattggttcttaaagaaagaaacagcaacaatcttataattgtgagttgaaggactatatc |
194 |
Q |
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| T |
9587481 |
ctccaagtattggtacccaaagtataaacactaactctatattggttcttaaagaaagaaacagcaacaatcttataattgtgagttgaaggactatatc |
9587580 |
T |
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| Q |
195 |
caaagctaaatgtggaagcgagaaatgtatttccttttcccggatatttcaaagg-gggaaagt |
257 |
Q |
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| T |
9587581 |
caaagctaaatgtggaagcgagaaatgtatttccttttcccggatatttcaaaggagggaaagt |
9587644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 784007 - 784174
Alignment:
| Q |
16 |
atcatatgacaaccaattaatggtgccactcacaaatacacctggattatcactgatg------tatgggaagtcttggatcctcctccaagtattggta |
109 |
Q |
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| T |
784007 |
atcatatgtcaaccaattaatggtgccactcacaaagactccaggcataggactggggccagaatatgggaagtcttggatcctcctccaagaatcggta |
784106 |
T |
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| Q |
110 |
cccaaagtataaacactaactctatattggtt---cttaaagaaagaaacagcaacaatcttataatt |
174 |
Q |
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| T |
784107 |
cccaaagtataaacactaactccatatttgttgacctcaaaaaaagaaacagcaacaatcttataatt |
784174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 43997335 - 43997237
Alignment:
| Q |
77 |
gggaagtcttggatcctcctccaagtattggtacccaaagtataaacactaa---ctctatattggttcttaaagaaagaaacagcaacaatcttataa |
172 |
Q |
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| T |
43997335 |
gggaagtcctggatcctcctccaataattagtacccaaagtatgaacattaacttctctgtttttgtcattgaagaaagaaacagcaacaaccttataa |
43997237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 43997413 - 43997361
Alignment:
| Q |
5 |
ctacttgaaatatcatatgacaaccaattaatggtgccactcacaaatacacc |
57 |
Q |
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| T |
43997413 |
ctacctgaaacatcatatatcaaccaattaatagtaccactcacaaatacacc |
43997361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 33026436 - 33026384
Alignment:
| Q |
74 |
tatgggaagtcttggatcctcctccaagtattggtacccaaagtataaacact |
126 |
Q |
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| T |
33026436 |
tatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacact |
33026384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 33037933 - 33037881
Alignment:
| Q |
74 |
tatgggaagtcttggatcctcctccaagtattggtacccaaagtataaacact |
126 |
Q |
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| T |
33037933 |
tatgggaagtctggtatccttctccaagtatccgtacccaaagtatgaacact |
33037881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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