View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10929_low_7 (Length: 253)

Name: NF10929_low_7
Description: NF10929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10929_low_7
NF10929_low_7
[»] chr5 (2 HSPs)
chr5 (14-250)||(5831861-5832097)
chr5 (31-250)||(5823942-5824161)
[»] scaffold0035 (1 HSPs)
scaffold0035 (15-217)||(78736-78938)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 5831861 - 5832097
Alignment:
Q  14 atgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5831861 atgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatatt 5831960  T
Q  114 gcataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttccttgtctataaacagaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5831961 gcataatccattagttcctcaaacgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttccttgtctataaacagaat 5832060  T
Q  214 tcaaacactcttccataaccaaacaacattgattcaa 250  Q
    ||||| |||||||||||||||||||||||||||||||    
T  5832061 tcaaagactcttccataaccaaacaacattgattcaa 5832097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 5824161 - 5823942
Alignment:
Q  31 tagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatccattagttc 130  Q
    |||||||||||||||||| || ||| |||| |||||||||||||||||||||||| ||||| ||   |||||||| ||||||   ||||||||| |  ||    
T  5824161 tagagtcaagaagttccactacaggtgtgagactcacgcacctaggaactttatattgattaatcgatgcaccacacgatatataataatccatcaaatc 5824062  T
Q  131 ctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttccttgtctataaacagaattcaaacactcttccata 230  Q
    ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5824061 ctcgaatgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttccttgtctataaacagaattcaaagactcttccata 5823962  T
Q  231 accaaacaacattgattcaa 250  Q
    ||||||||||||||||||||    
T  5823961 accaaacaacattgattcaa 5823942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 78938 - 78736
Alignment:
Q  15 tgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattg 114  Q
    ||||| || |||||||||||||| | ||| |||||||||||||| ||| | || ||||| ||||||||||| ||||| ||    ||||| |  || ||||    
T  78938 tgaacagagaccaccctagagtccaaaagctccattataggagtaaaattaacacaccttggaactttatattgatttattgaagcacctcttgagattg 78839  T
Q  115 cataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttccttgtctataaacagaatt 214  Q
    |||||||||| || |||||||| || ||| | ||||| || |  ||||| ||||| |||||||||| ||||||||| || | ||| ||||||||||||||    
T  78838 cataatccataagctcctcaaaagttccactcttcacaacccttatctccaatggtccaattgaatgatcagcaaccctacattgcctataaacagaatt 78739  T
Q  215 caa 217  Q
    |||    
T  78738 caa 78736  T

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