View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10929_low_8 (Length: 243)

Name: NF10929_low_8
Description: NF10929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10929_low_8
NF10929_low_8
[»] chr5 (17 HSPs)
chr5 (16-243)||(19038199-19038426)
chr5 (16-243)||(28238769-28238996)
chr5 (16-243)||(28879392-28879619)
chr5 (18-243)||(30707841-30708066)
chr5 (16-243)||(8577575-8577802)
chr5 (66-243)||(8739-8916)
chr5 (16-242)||(7760132-7760351)
chr5 (16-203)||(38407887-38408067)
chr5 (16-179)||(5199625-5199781)
chr5 (16-179)||(38970899-38971062)
chr5 (16-101)||(511646-511731)
chr5 (16-105)||(42937692-42937782)
chr5 (24-179)||(8699470-8699625)
chr5 (16-235)||(15939447-15939666)
chr5 (16-102)||(42538728-42538814)
chr5 (16-86)||(40623041-40623111)
chr5 (147-191)||(42937805-42937849)
[»] chr2 (19 HSPs)
chr2 (16-243)||(17423260-17423487)
chr2 (16-243)||(30493997-30494224)
chr2 (16-243)||(15834050-15834277)
chr2 (16-243)||(43981315-43981542)
chr2 (16-241)||(5354767-5354992)
chr2 (16-243)||(43536740-43536967)
chr2 (16-243)||(28471322-28471549)
chr2 (16-243)||(45431299-45431526)
chr2 (16-242)||(39950289-39950515)
chr2 (16-240)||(29398641-29398865)
chr2 (28-242)||(7189608-7189822)
chr2 (16-242)||(10825954-10826173)
chr2 (20-179)||(36653536-36653695)
chr2 (16-175)||(7416644-7416803)
chr2 (16-119)||(20067493-20067596)
chr2 (112-176)||(40538400-40538464)
chr2 (39-74)||(22529914-22529949)
chr2 (204-243)||(22680313-22680351)
chr2 (16-74)||(40538488-40538546)
[»] chr3 (29 HSPs)
chr3 (16-243)||(46401499-46401726)
chr3 (16-243)||(42901192-42901419)
chr3 (16-243)||(46698347-46698574)
chr3 (16-243)||(49141550-49141777)
chr3 (16-243)||(50477809-50478036)
chr3 (16-243)||(54388919-54389146)
chr3 (16-243)||(34048219-34048446)
chr3 (16-243)||(2272088-2272315)
chr3 (16-242)||(9473074-9473300)
chr3 (16-243)||(36130279-36130506)
chr3 (16-242)||(47071219-47071438)
chr3 (16-128)||(2648608-2648720)
chr3 (16-179)||(17562375-17562538)
chr3 (16-198)||(599706-599888)
chr3 (16-206)||(52388630-52388820)
chr3 (16-243)||(4005443-4005669)
chr3 (16-242)||(20353336-20353562)
chr3 (16-179)||(49266401-49266564)
chr3 (16-179)||(41615127-41615282)
chr3 (16-242)||(44232513-44232732)
chr3 (16-230)||(48565683-48565890)
chr3 (16-105)||(50214199-50214288)
chr3 (16-242)||(16646302-16646516)
chr3 (16-179)||(42804993-42805156)
chr3 (16-191)||(48891363-48891538)
chr3 (16-179)||(42759520-42759676)
chr3 (16-179)||(6927989-6928146)
chr3 (109-179)||(50758957-50759027)
chr3 (16-191)||(30253126-30253301)
[»] chr6 (16 HSPs)
chr6 (16-243)||(27638542-27638769)
chr6 (16-243)||(6203943-6204170)
chr6 (16-243)||(11690910-11691137)
chr6 (16-243)||(30826654-30826881)
chr6 (16-243)||(22304024-22304251)
chr6 (16-242)||(31770869-31771088)
chr6 (16-179)||(2406059-2406222)
chr6 (16-191)||(2407089-2407257)
chr6 (18-179)||(26172776-26172936)
chr6 (94-242)||(26440236-26440384)
chr6 (16-179)||(18005475-18005638)
chr6 (16-179)||(24085850-24086013)
chr6 (16-179)||(32642750-32642912)
chr6 (16-73)||(3384393-3384449)
chr6 (43-138)||(21603283-21603378)
chr6 (16-74)||(32641897-32641955)
[»] chr4 (30 HSPs)
chr4 (16-243)||(41796075-41796302)
chr4 (16-243)||(6178840-6179067)
chr4 (16-243)||(49168305-49168532)
chr4 (16-243)||(31424534-31424761)
chr4 (16-243)||(1306170-1306399)
chr4 (16-243)||(49093215-49093443)
chr4 (16-243)||(21018628-21018855)
chr4 (16-242)||(40355453-40355679)
chr4 (94-243)||(30723877-30724026)
chr4 (16-242)||(44677020-44677246)
chr4 (16-242)||(50277949-50278175)
chr4 (16-241)||(37016633-37016846)
chr4 (16-242)||(8109946-8110172)
chr4 (16-242)||(10730030-10730256)
chr4 (16-242)||(10943799-10944025)
chr4 (16-86)||(30723777-30723847)
chr4 (16-242)||(50904158-50904377)
chr4 (16-179)||(71795-71958)
chr4 (16-138)||(50196225-50196351)
chr4 (16-123)||(55278820-55278927)
chr4 (16-118)||(50020734-50020836)
chr4 (68-242)||(51685930-51686104)
chr4 (19-101)||(46438956-46439038)
chr4 (16-179)||(13624569-13624732)
chr4 (16-75)||(30706866-30706925)
chr4 (28-86)||(14317560-14317618)
chr4 (25-116)||(12891833-12891924)
chr4 (112-235)||(41931108-41931231)
chr4 (43-86)||(40886693-40886736)
chr4 (151-191)||(46438914-46438954)
[»] chr8 (23 HSPs)
chr8 (16-243)||(1055320-1055547)
chr8 (16-243)||(23019323-23019550)
chr8 (16-243)||(26662241-26662468)
chr8 (16-243)||(22532-22759)
chr8 (16-243)||(486769-486996)
chr8 (16-243)||(15033801-15034028)
chr8 (16-243)||(42482542-42482769)
chr8 (16-242)||(34367646-34367872)
chr8 (16-242)||(39604083-39604308)
chr8 (16-242)||(43214198-43214405)
chr8 (16-179)||(5301343-5301506)
chr8 (16-179)||(34819646-34819809)
chr8 (16-242)||(41243120-41243327)
chr8 (16-179)||(35554453-35554609)
chr8 (16-242)||(39831787-39832005)
chr8 (16-179)||(40075736-40075892)
chr8 (16-175)||(5679723-5679882)
chr8 (16-179)||(45132597-45132760)
chr8 (16-202)||(20858848-20859034)
chr8 (16-175)||(21176349-21176508)
chr8 (18-114)||(30761310-30761406)
chr8 (16-179)||(51940-52103)
chr8 (111-179)||(30761417-30761485)
[»] chr7 (25 HSPs)
chr7 (16-243)||(41883334-41883561)
chr7 (16-243)||(48406152-48406379)
chr7 (16-243)||(35607427-35607654)
chr7 (16-243)||(9368438-9368665)
chr7 (16-243)||(17460298-17460525)
chr7 (16-243)||(17592689-17592916)
chr7 (16-243)||(15071319-15071546)
chr7 (16-243)||(42504970-42505197)
chr7 (16-242)||(17837755-17837974)
chr7 (16-242)||(10521625-10521851)
chr7 (16-241)||(5538587-5538812)
chr7 (16-235)||(16680261-16680480)
chr7 (16-235)||(17654497-17654716)
chr7 (16-242)||(13322829-13323055)
chr7 (16-179)||(27450723-27450886)
chr7 (16-175)||(47522013-47522172)
chr7 (16-242)||(34741523-34741742)
chr7 (16-191)||(37343096-37343271)
chr7 (16-86)||(11630317-11630387)
chr7 (16-179)||(47670239-47670402)
chr7 (16-128)||(16488281-16488394)
chr7 (146-241)||(11630427-11630522)
chr7 (109-179)||(9491989-9492059)
chr7 (109-179)||(41734630-41734700)
chr7 (16-52)||(41734713-41734749)
[»] chr1 (19 HSPs)
chr1 (16-243)||(13637036-13637263)
chr1 (16-243)||(3729379-3729607)
chr1 (16-243)||(26878510-26878730)
chr1 (16-243)||(19158814-19159041)
chr1 (16-242)||(95132-95351)
chr1 (16-242)||(31780697-31780916)
chr1 (16-242)||(22526797-22527016)
chr1 (16-242)||(52804662-52804888)
chr1 (27-179)||(47505198-47505350)
chr1 (18-242)||(19522316-19522533)
chr1 (16-138)||(50617929-50618051)
chr1 (16-179)||(47660730-47660893)
chr1 (16-203)||(21143770-21143950)
chr1 (16-179)||(45828433-45828596)
chr1 (16-202)||(11196697-11196883)
chr1 (16-191)||(49855053-49855228)
chr1 (16-138)||(16269827-16269949)
chr1 (35-114)||(23273427-23273506)
chr1 (16-56)||(35256442-35256482)
[»] scaffold0022 (1 HSPs)
scaffold0022 (36-138)||(56477-56579)
[»] scaffold0155 (1 HSPs)
scaffold0155 (16-179)||(12208-12371)
[»] scaffold0117 (1 HSPs)
scaffold0117 (33-101)||(22343-22411)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 19038199 - 19038426
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19038199 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 19038298  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19038299 tctcctctcctgcctgctcaccccgggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 19038398  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  19038399 atcagtcggatgtctggggatggtctgc 19038426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 28238769 - 28238996
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  28238769 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccccaggacatagccatccgccacccgccatg 28238868  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28238869 tatcctctcctgcctgctcacctcgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 28238968  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  28238969 atcagtcggatgtctggggatggtctgc 28238996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 28879619 - 28879392
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  28879619 tcatttgcaggcctcggaagatctcctgaaagaggtggaaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 28879520  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | |||||||||||||||||| || |  |||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  28879519 tatcctctcctgcctgctcatcccgatcgtccgccttaatcgtgtgagtgcggaagtcgacgaacacctgcacaatggaagacggtgggaggtccctaac 28879420  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    |||| |||||||||||||||||||||||    
T  28879419 atcaatcggatgtctggggatggtctgc 28879392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 30708066 - 30707841
Alignment:
Q  18 atttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||     
T  30708066 atttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatccgccacccgccatgta 30707967  T
Q  118 tcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaacat 217  Q
    ||||||||||||||||||||| |  |||||||||||| ||||||||||| |||||| ||||||| ||||| |||||||| |||||||||||||||||||     
T  30707966 tcctctcctgcctgctcaccccgatcgtccgccttaatcgtgtgagtgcggaagtcaacgaacacctgcataatggaagacggtgggaggtccctaacag 30707867  T
Q  218 cagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||    
T  30707866 cagtcggatgtctggggatggtctgc 30707841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 8577575 - 8577802
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||| ||||||||    
T  8577575 tcatttgcaggcctcagaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatctgccgtccgccatg 8577674  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    |||||||||||||||||| |||| |  |||||||||||| ||||||||||| |||||||||||||  |||||||||| ||||   |||||  ||   |||    
T  8577675 tctcctctcctgcctgctgaccccgatcgtccgccttaatcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaagggaatgggatctctacaac 8577774  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||| || |||||||||||||||||||||    
T  8577775 atccgtgggatgtctggggatggtctgc 8577802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 66 - 243
Target Start/End: Original strand, 8739 - 8916
Alignment:
Q  66 gtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtg 165  Q
    |||||||||||||| |||||| ||||||||| |||||| |  ||| ||||||||||||||||||||||||||| |  |||| ||||||||||||||||||    
T  8739 gtgagacaccctagtgtaccataggacatagtcatccgtcatccgtcatgtctcctctcctgcctgctcaccccgatcgtctgccttaagcgtgtgagtg 8838  T
Q  166 ccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaacatcagtcggatgtctggggatggtctgc 243  Q
    | |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8839 cggaagtcgacgaacacctgcacaatgggaggcggcgggaggtccctaacatcagtcggatgtctggggatggtctgc 8916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 7760351 - 7760132
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||| || |||||||||||||||       |||    
T  7760351 tcatttgcaggcctcagaagatctcctggaagaggtgacaagatttgagggtgagacaccctagtgtaccatagcacatagccatccgcc-------atg 7760259  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| |||||||||||||  |||||||||| || ||||||| |||||   |||    
T  7760258 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaaagcggtggcaggtctacaac 7760159  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||  |||||||||||||||||||    
T  7760158 atccgttagatgtctggggatggtctg 7760132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 38407887 - 38408067
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| || ||||||||||       ||||||||    
T  38407887 tcatttgctggcctaggaagatctcctggaagaggtggcaagatctaagggtgagacaccctagtgtaccatagcacatagccat-------ccgccatg 38407979  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgg 203  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| |||||||||||||  ||||||||||  |||||||||    
T  38407980 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtgaggcggtgg 38408067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 5199781 - 5199625
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||| ||| || |||||| |||||||||||||||||||||| |||||| |  |||||||||||       |||||||    
T  5199781 tcatttgctggcctcggaagatctcctagaagagatggcaaaatctgagggtgagacaccctagtgtaccataacacatagccatc-------cgccatg 5199689  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||||||||||||||||     || ||||||||| ||||||||||| ||||||||||||    
T  5199688 tctgctctcctgcctgctcacctcaatcggccgccttaaacgtgtgagtgcggaagtcgacgaa 5199625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 38971062 - 38970899
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||| |||||||||||||||| |||||| || |||||||||||||||||| ||| ||||||||  |||||||| |||  |   |||||||    
T  38971062 tcatttgctggcctaggaagatctcctggaagaggtggaaaaatctgagggtgagacaccttagtgtaccacaacacatagccctccctcatacgccatg 38970963  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| |||| ||| ||||||||||    ||  |||||||||||||||||||| ||||||||||||    
T  38970962 tctgctctgctgtctgctcaccccaatcggtcgccttaagcgtgtgagtgcggaagtcgacgaa 38970899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 511646 - 511731
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatc 101  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| |  |||||||||||    
T  511646 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccttagtgtaccataacacatagccatc 511731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 42937692 - 42937782
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgta-ccacaggacatagccatccgcc 105  Q
    ||||||||  |||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||| || |||||||||||||||    
T  42937692 tcatttgctagcctgggaagatctcctggaagaggtggcaaaatctgagggtgagacaccctagtgtacccatagcacatagccatccgcc 42937782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 8699470 - 8699625
Alignment:
Q  24 aggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctcctct 123  Q
    ||||||||||| ||||||||||| | ||||||| |||||||||||||||||    | ||||||  | |||||| |||| | |   |||||||||| ||||    
T  8699470 aggcctcggaatatctcctggaagaagtggcaaaatctgagggtgagacacaacggtgtaccatcgtacataggcatctgtcaaacgccatgtctgctct 8699569  T
Q  124 cctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||||| |||||||||    || || ||| |||||||||||||| ||||||||||||    
T  8699570 cctgcatgctcaccccaatcggcctcctcaagcgtgtgagtgcggaagtcgacgaa 8699625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 15939666 - 15939447
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||| ||||| |||||||| ||||||||| |||| ||||||||||| | ||| |||||| |  |||||||| |||  |   |||| ||    
T  15939666 tcatttgctggcctcgaaagatatcctggaagaggtggcaaaatctaagggtgagacaacttagtgtaccataacacatagccctccctcatacgccttg 15939567  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||| ||||||||||| ||    ||  | |||||||||||||||||| ||||||||| ||   |||||||||   ||||||||| || ||   |||    
T  15939566 tctgctctactgcctgctcatcccaatcggtctccttaagcgtgtgagtgcggaagtcgacaaaagcctgcacaatatgaggcggtggcagctcaacaac 15939467  T
Q  216 atcagtcggatgtctgggga 235  Q
    |||| |||||||||| ||||    
T  15939466 atcaatcggatgtctaggga 15939447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 42538814 - 42538728
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatcc 102  Q
    |||||||| || ||||||||||||||||||| ||||||||| |||||||||||| ||||  ||| |||||| |  ||||||||||||    
T  42538814 tcatttgctggtctcggaagatctcctggaagaggtggcaaaatctgagggtgaaacactttagtgtaccataacacatagccatcc 42538728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 40623041 - 40623111
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtacca 86  Q
    |||||||| |||||||||||||||| ||||| ||||||||| |||||||| |||| |||| ||| ||||||    
T  40623041 tcatttgctggcctcggaagatctcttggaagaggtggcaaaatctgaggatgaggcaccttagtgtacca 40623111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 42937805 - 42937849
Alignment:
Q  147 cgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaat 191  Q
    |||||||||||||||||||| |||||||||||||  |||||||||    
T  42937805 cgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaat 42937849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 17423487 - 17423260
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17423487 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 17423388  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17423387 tctcctctcctgcctgctcaccccgggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 17423288  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  17423287 atcagtcggatgtctggggatggtctgc 17423260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 30493997 - 30494224
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30493997 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 30494096  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30494097 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 30494196  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  30494197 atcagtcggatgtctggggatggtctgc 30494224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 15834277 - 15834050
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  15834277 tcatttgcaggcctcagaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 15834178  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15834177 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 15834078  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  15834077 atcagtcggatgtctggggatggtctgc 15834050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 43981542 - 43981315
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  43981542 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgcctcccgccatg 43981443  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  43981442 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgatgaacatctgcacaatggaaggcggggggaggtccctaac 43981343  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  43981342 atcagtcggatgtctggggatggtctgc 43981315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 5354992 - 5354767
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  5354992 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 5354893  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5354892 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgatgaacatctgcacaatggaaggcggggggaggtccctaac 5354793  T
Q  216 atcagtcggatgtctggggatggtct 241  Q
    ||||||||||||||||||||||||||    
T  5354792 atcagtcggatgtctggggatggtct 5354767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 43536740 - 43536967
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  43536740 tcatttgcaggcctcggaagatctactggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatctgccacccgccatg 43536839  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43536840 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 43536939  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||| ||||||||||||| ||||||    
T  43536940 atcagtcagatgtctggggatagtctgc 43536967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 28471549 - 28471322
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  28471549 tcatttgcaggtctcggaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatccgccgcccgccatg 28471450  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||| ||||||||||| |  |||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  28471449 tatcctctcctacctgctcaccccgatcgtccgccttaatcgtgtgagtgcggaagtcgacgaacacctgcacaatggaagacggtgggagatccctaac 28471350  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  28471349 atcagtcggatgtctggggatggtctgc 28471322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 45431526 - 45431299
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||    
T  45431526 tcatttgcaggcctcggaagatctcctagaaaaggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatccgccacccgccatg 45431427  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | |||| |||||||||||||||| |  |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  45431426 tatcctttcctgcctgctcaccccgatcgtccgccttaatcgtgtgagtgcggaagttgacgaacacctgcacaatggaaggcggtgggaggtccctaac 45431327  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    |||||| |||||||||||||||||||||    
T  45431326 atcagtaggatgtctggggatggtctgc 45431299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 39950515 - 39950289
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  ||||||||    
T  39950515 tcatttgcaggcctcggaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccataggacatagccatccgccatccgccatg 39950416  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||  ||| |||||| ||||||||||||||||   |||    
T  39950415 tctgctctcctgcctgctcaccccaatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgtacaatgtaaggcggtgggaggtctgcaac 39950316  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||||||||||||||| ||||||||||    
T  39950315 atcagtcggatgtctgcggatggtctg 39950289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 29398641 - 29398865
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||| ||||||| |||||||| || || ||| |||||||||||||||||||||| |||||| || |||||| ||||||||  ||||||||    
T  29398641 tcatttgcaggcctaggaagatttcctggaagagatgacaaaatctgagggtgagacaccctagtgtaccatagcacatagtcatccgccatccgccatg 29398740  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||||| | |||   |||    
T  29398741 tctgctctcctgcctgctcaccccaatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaaggcggtggcaagtctacaac 29398840  T
Q  216 atcagtcggatgtctggggatggtc 240  Q
    ||| |||||||||||||||||||||    
T  29398841 atccgtcggatgtctggggatggtc 29398865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 7189822 - 7189608
Alignment:
Q  28 ctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctcctctcctg 127  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| || | ||||||||||| |  | ||||||||| ||||||||    
T  7189822 ctcggaagatctcctgaaagaggtggcaagatctgagggtgagacaccctagtgtaccatagcatatagccatccgtcatcagccatgtctgctctcctg 7189723  T
Q  128 cctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaacatcagtcggatg 227  Q
    |||||||||||    || ||||||||||||||||||| | |||||||||||||  |||||||||| ||||| ||||||||||   |||||||||||||||    
T  7189722 cctgctcaccccaatcggccgccttaagcgtgtgagtacggaagtcgacgaacgcctgcacaatgtaaggcagtgggaggtctacaacatcagtcggatg 7189623  T
Q  228 tctggggatggtctg 242  Q
    |||||||||||||||    
T  7189622 tctggggatggtctg 7189608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 10825954 - 10826173
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||       ||||||||    
T  10825954 tcatttgcaggcctcggaatatctcctggaagaggtggcaaaatctgagggtgagacaccctagtgtaccataggacatagccat-------ccgccatg 10826046  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| || | ||||||||||||||    |||||||||||||| ||||||||| |||||||||||||  |||||||||| |||||||||| |||||   |||    
T  10826047 tctgctattctgcctgctcaccccaatcgtccgccttaagcatgtgagtgcggaagtcgacgaacgcctgcacaatgtaaggcggtggcaggtctacaac 10826146  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||||||| ||||||||||    
T  10826147 atccgtcggatgtctgcggatggtctg 10826173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 36653536 - 36653695
Alignment:
Q  20 ttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctc 119  Q
    |||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||  ||||| |  ||||||||||||| |  || ||||||||     
T  36653536 ttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggcgagacacccgagtataccataacacatagccatccgtcatccaccatgtctg 36653635  T
Q  120 ctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    |||||||| ||||||||||    || ||||||||||||||||||||| ||||||||||||    
T  36653636 ctctcctgtctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 36653695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 7416803 - 7416644
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||||||| ||||||||||| | ||||||| ||||||| ||||||| |  | ||||||||  | ||||||||||| |||    ||||||    
T  7416803 tcatttggaggcctcggaatatctcctggaagaagtggcaaaatctgagagtgagacgcaatggcgtaccatcgtacatagccatctgccatatgccatg 7416704  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcga 175  Q
    ||||||||||||| ||||||||     || | ||||||||||||||||||| ||||||||    
T  7416703 tctcctctcctgcatgctcaccgcaatcggctgccttaagcgtgtgagtgcggaagtcga 7416644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 20067493 - 20067596
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||| || |||||||||||||||||| ||| | ||||||| ||| |||||||||||||||||  |||||| |  |||||||||||| ||  |||||||     
T  20067493 tcattagctggcctcggaagatctcctagaagaagtggcaaaatcagagggtgagacaccctaatgtaccatattacatagccatcctccatccgccatt 20067592  T
Q  116 tctc 119  Q
    ||||    
T  20067593 tctc 20067596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 40538464 - 40538400
Alignment:
Q  112 catgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgac 176  Q
    ||||||||||||||||| |||||||||    || ||||||||||||||||||||  |||||||||    
T  40538464 catgtctcctctcctgcatgctcaccccaatcggccgccttaagcgtgtgagtgtggaagtcgac 40538400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 22529914 - 22529949
Alignment:
Q  39 tcctggaataggtggcaagatctgagggtgagacac 74  Q
    |||||||||||||||||| |||||||||||||||||    
T  22529914 tcctggaataggtggcaaaatctgagggtgagacac 22529949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 22680351 - 22680313
Alignment:
Q  204 gaggtccctaacatcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  22680351 gaggtccctaacatcagtcggatgtct-gggatggtctgc 22680313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40538546 - 40538488
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacac 74  Q
    ||||||| ||||||| ||| ||||| ||||| | ||||||| |||||||||||||||||    
T  40538546 tcatttggaggcctcagaatatctcttggaagaagtggcaaaatctgagggtgagacac 40538488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 46401726 - 46401499
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46401726 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 46401627  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46401626 tctcctctcctgcctgctcaccccggacgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 46401527  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  46401526 atcagtcggatgtctggggatggtctgc 46401499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 42901192 - 42901419
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  42901192 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 42901291  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42901292 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 42901391  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  42901392 atcagtcggatgtctggggatggtctgc 42901419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 46698347 - 46698574
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  46698347 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 46698446  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46698447 tatcctctcctgcctgctcaccccgagcgtccgtcttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 46698546  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  46698547 atcagtcggatgtctggggatggtctgc 46698574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 49141550 - 49141777
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  49141550 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 49141649  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||    
T  49141650 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaaatcgatgaacatctgcacaatggaaggcggggggaggtccctaac 49141749  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  49141750 atcagtcggatgtctggggatggtctgc 49141777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 50477809 - 50478036
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  50477809 tcatttgcaggcctcggaagatctactggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 50477908  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||    
T  50477909 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcaacgaacatctgcacaatggaaggcggggggaggtccctaac 50478008  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  50478009 atcagtcggatgtctggggatggtctgc 50478036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 54389146 - 54388919
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  54389146 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 54389047  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||     
T  54389046 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgatgaacatctgcacaatggaaggcggggggaggtccctaaa 54388947  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  54388946 atcagtcggatgtctggggatggtctgc 54388919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 34048446 - 34048219
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  34048446 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 34048347  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | |||||||||||||||||||||   ||  |||||||||||||||||||||  || |||| |||||||||||||||||||||||| ||||||||||||||    
T  34048346 tatcctctcctgcctgctcaccccaagctaccgccttaagcgtgtgagtgcgaaaatcgatgaacatctgcacaatggaaggcggggggaggtccctaac 34048247  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  34048246 atcagtcggatgtctggggatggtctgc 34048219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 2272088 - 2272315
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  ||||||||    
T  2272088 tcatttgcaggcctcaaaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccataggacatagccatccgccatccgccatg 2272187  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||||||  ||||||||||||| |||||||||||||   |||    
T  2272188 tctgctctcctgcctgctcaccccgatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatggaaagcggtgggaggtctgcaac 2272287  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  2272288 atcagtcggatgtctggggatggtctgc 2272315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 9473300 - 9473074
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  ||| ||||    
T  9473300 tcatttgcaggcctcggaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccataggacatagccatccgccatccgtcatg 9473201  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    |||||||||||||||||||||||    || ||||||||||||| ||||||| |||||||||||||  ||| ||||||  || |||||| || |    |||    
T  9473200 tctcctctcctgcctgctcaccccaatcggccgccttaagcgtctgagtgcggaagtcgacgaacgcctggacaatgtgagacggtggcagctgtacaac 9473101  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||  ||||||||||||||| ||||||    
T  9473100 atcgatcggatgtctggggacggtctg 9473074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 36130506 - 36130279
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||| |||||| || | ||||||||| |||  ||||||||    
T  36130506 tcatttgcaggcctcggaagatctccagggagaggtggcaaaatctgagggtgagacaccctagtgtaccatagcatatagccatcagccatccgccatg 36130407  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | | |||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||  |||||||||| ||||  ||||||| ||   |||    
T  36130406 tatgctctcctgcctgctcaccccaatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaagggagtgggagctctacaac 36130307  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||| || |||||||||||||||||||||    
T  36130306 atccgtgggatgtctggggatggtctgc 36130279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 47071219 - 47071438
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  || |||||||||||||| |||||| || ||||||||||       ||||||||    
T  47071219 tcatttgcaggcctcggaagatctcctggtaaaggtggcaagatccaagagtgagacaccctagtgtaccatagcacatagccat-------ccgccatg 47071311  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||||||||||||||||     |  ||||||||||| ||||||||| |||||||||||||  || ||||||| ||||||||||||||||   |||    
T  47071312 tctgctctcctgcctgctcacctcaatcagccgccttaagcatgtgagtgcggaagtcgacgaacgcctacacaatgtaaggcggtgggaggtctacaac 47071411  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||||||||||||||||||    
T  47071412 atccgtcggatgtctggggatggtctg 47071438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 2648608 - 2648720
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||    
T  2648608 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatccgccacccgccatg 2648707  T
Q  116 tctcctctcctgc 128  Q
    | |||||||||||    
T  2648708 tatcctctcctgc 2648720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 17562375 - 17562538
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||| || ||||||||||| |||   |||||||    
T  17562375 tcatttgctggcctcggaagatctcctggaagagatggcgagatctgagggtgagacaccctagtgtaccatagcacatagccatctgccatacgccatg 17562474  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| ||||||||||||    
T  17562475 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 17562538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 599888 - 599706
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||| |||| ||||||| | |||||||||||||||| ||||| |||||| ||   ||||||||| |||  ||||||||    
T  599888 tcatttgcaggcctcggaagatctccaggaagaggtggcgaaatctgagggtgagacatcctagtgtaccatagctaatagccatcagccatccgccatg 599789  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggc 198  Q
     || |||||||||||||||||||    ||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||    
T  599788 actgctctcctgcctgctcaccccaatcgtccaccttaagcgtgtgagtgcagaagtcgacgaacacctgcacaatgtaaggc 599706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 52388630 - 52388820
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||    | ||||||||| ||||||||||||||||||||||  ||||| || | ||||||||| |||  ||||||||    
T  52388630 tcatttgcaggcctcggaagatctccattgagaggtggcaaaatctgagggtgagacaccctagtctaccatagcatatagccatcagccatccgccatg 52388729  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggag 206  Q
    ||| |||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||  |||||||||| ||||  |||||||    
T  52388730 tctactctcctgcctgctcaccccaatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaagggagtgggag 52388820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 4005443 - 4005669
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||  || | |||||||||  | ||||||||||||||||||| |||||| || | ||||||||| |||  ||||||||    
T  4005443 tcatttgcaggcctcggaagatctctagggagaggtggcaaagtatgagggtgagacaccctagtgtaccatagcatatagccatcagccatccgccatg 4005542  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||||||||| |||||||    || |||| |||||||||||||||| |||||||||||||  |||||||||| ||||  ||||||| ||   |||    
T  4005543 tctgctctcctgcctactcaccccaatcg-ccgctttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaagggagtgggagctctacaac 4005641  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||| || |||||||| ||||||||||||    
T  4005642 atccgtgggatgtctagggatggtctgc 4005669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 20353562 - 20353336
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||  |||||| ||||||||| || || |||||| || |||||||||||||||||||||| |||||| |  |||||||||||||||  | ||||||    
T  20353562 tcatttgttggcctcagaagatctcgtgaaagaggtggaaaaatctgagggtgagacaccctagtgtaccataacacatagccatccgccatcagccatg 20353463  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||  ||||||||||||   ||||||| |   ||||||||| || ||   |||    
T  20353462 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgtggaagtcgacgaatgcctgcacagtctgaggcggtggtagctctacaac 20353363  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||||||||||| ||||| |||||    
T  20353362 atccgtcggatgtctagggatcgtctg 20353336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 49266401 - 49266564
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |  ||| || |||| |||  ||||||||    
T  49266401 tcatttgctgacctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccctagtgtaccataacacacagtcatctgccatccgccatg 49266500  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| || ||||||||||||||||    || || ||||||||||||||||||  |||||||||||    
T  49266501 tctgctttcctgcctgctcaccctaatcggccaccttaagcgtgtgagtgcgaaagtcgacgaa 49266564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 41615282 - 41615127
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||| |  |||||||||||       |||||||    
T  41615282 tcatttgctggcctcggaagatctcctgtaagaggtggcaaaatctgagggtgagacaccctagtgtaccataacacatagccatc-------cgccatg 41615190  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| |||||||||||||||||||    || ||||| ||||||||||||||| ||||||||||||    
T  41615189 tctgctctcctgcctgctcaccc-catcggccgccctaagcgtgtgagtgcggaagtcgacgaa 41615127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 44232732 - 44232513
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||| |  |||| | |||       | ||||||    
T  44232732 tcatttgctggcctcggaagatctcctgaaagaggtggcaaaatctgagggtgagacaccctagtgtaccataacacattgtcat-------cagccatg 44232640  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | | ||||| |||||||||||||    || ||||||||||||||||||||| |||| ||||||| ||||||| |||   ||||||||| || ||   |||    
T  44232639 tatgctctcttgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagccgacgaatatctgcataatctgaggcggtggcagctctacaac 44232540  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||| |||||||||||| ||||||    
T  44232539 atctgtcagatgtctggggacggtctg 44232513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 48565890 - 48565683
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||  || |||||| |  |||||||||||       |||||||    
T  48565890 tcatttgctggcctcggaagatcttctggaagaggtggcaaaatctgagggtgagacacctcagtgtaccataacacatagccatc-------cgccatg 48565798  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||  |||||||||||||    || ||||||||||||||||||||| ||||||||||||   |||||||||   ||||||||| || ||   |||    
T  48565797 tctgctcttgtgcctgctcaccccattcgaccgccttaagcgtgtgagtgcggaagtcgacgaatgcctgcacaatctgaggcggtggcagctctacaac 48565698  T
Q  216 atcagtcggatgtct 230  Q
    ||| |||||||||||    
T  48565697 atcggtcggatgtct 48565683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 50214199 - 50214288
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgcc 105  Q
    |||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||| || |||||||||||||||    
T  50214199 tcatttgctggcctcggaatatctcctggaagaggtggcaagatttgagggtgagacaccctagtgtaccatagcacatagccatccgcc 50214288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 16646516 - 16646302
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||| | ||||||||||||||||||| ||||||||| |||  |||||||||||||||||  ||||| || |||||| ||||||||  ||||||||    
T  16646516 tcatttgcaagtctcggaagatctcctggaagaggtggcaaaatcaaagggtgagacaccctagtttaccatagcacatagtcatccgccatccgccatg 16646417  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    |             |||||||||    |||| ||||||||||||||||||| |||||||||||||  ||||| |||| |||||||||| |||||   |||    
T  16646416 t------------gtgctcaccccaatcgtctgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcataatgtaaggcggtggcaggtctacaac 16646329  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||   || ||||||| |||||||||||    
T  16646328 atacttcagatgtcttgggatggtctg 16646302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 42804993 - 42805156
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||| ||| ||||||||||| | ||||||| |||||||||||||||||  | | ||||||  | ||||||||||| |||   | |||||    
T  42804993 tcatttggaggcctcagaatatctcctggaagaagtggcaaaatctgagggtgagacacaatggtgtaccatcgtacatagccatctgccatacaccatg 42805092  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||||||||| ||| |||||||||    || |||||||||||||  |||||| ||||||||||||    
T  42805093 tctcctctcatgcatgctcaccccaatcgcccgccttaagcgtacgagtgcggaagtcgacgaa 42805156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 48891538 - 48891363
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| |||||||| || ||||||||||| | ||||||| |||||||||||||||||    | ||||||  | ||||||||||| |||   |||||||    
T  48891538 tcatttggaggcctcgtaatatctcctggaagaagtggcaaaatctgagggtgagacacaacggtgtaccatcgtacatagccatctgccatacgccatg 48891439  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaat 191  Q
     || ||||| ||| ||||||| |    || ||||||||||||||||||||| ||||||||||||  ||||||||||    
T  48891438 cctgctctcatgcatgctcactccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaaagtctgcacaat 48891363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 42759676 - 42759520
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||| | ||| ||||||||| || ||||||||||||||| ||| |||||| |  |||||||||||       |||||||    
T  42759676 tcatttgctggcctcggaagatctcttagaagaggtggcaaaatttgagggtgagacaccttagtgtaccataaaacatagccatc-------cgccatg 42759584  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||  || ||||||||||    || || |||||||||||||||||| ||||||||||||    
T  42759583 tctgctcttgtgtctgctcaccccaatcgaccaccttaagcgtgtgagtgcggaagtcgacgaa 42759520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 6928146 - 6927989
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtacca-caggacatagccatccgccgcccgccat 114  Q
    |||||||| ||||||||||||||||||| || ||||||||| || ||||||||| ||||| ||| ||||||  |  ||||||||||       |||||||    
T  6928146 tcatttgctggcctcggaagatctcctgaaagaggtggcaaaatttgagggtgacacaccttagtgtaccataaacacatagccat-------ccgccat 6928054  T
Q  115 gtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    |||| ||||   ||||||||||||    || ||||||||||||||||||||| ||||||||||||    
T  6928053 gtctgctcttgcgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 6927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 50759027 - 50758957
Alignment:
Q  109 cgccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    |||||||||| ||||||||| |||||||||    || ||||||||||||||||||||| ||||||||||||    
T  50759027 cgccatgtctgctctcctgcatgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 50758957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 30253126 - 30253301
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||||||| ||||||  ||| | ||||||| |||||||  ||||||||      ||||||  | ||||||||||| |||   |||||||    
T  30253126 tcatttggaggcctcggaatatctcccagaagaagtggcaaaatctgagcatgagacacaacgatgtaccatcgtacatagccatctgccatacgccatg 30253225  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaat 191  Q
    | |  |||| ||| |||||||||  | |  ||||||||||||||||||||| |||||||| ||| | |||||||||    
T  30253226 tttgttctcttgcatgctcaccccagtcagccgccttaagcgtgtgagtgcggaagtcgatgaaaacctgcacaat 30253301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 27638769 - 27638542
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27638769 tcatttgcaggcctcggaagatctcttggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccacccgccatg 27638670  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27638669 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 27638570  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  27638569 atcagtcggatgtctggggatggtctgc 27638542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 6204170 - 6203943
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  6204170 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 6204071  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6204070 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 6203971  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  6203970 atcagtcggatgtctggggatggtctgc 6203943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 11691137 - 11690910
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  11691137 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 11691038  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11691037 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 11690938  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  11690937 atcagtcggatgtctggggatggtctgc 11690910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 30826654 - 30826881
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30826654 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 30826753  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30826754 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 30826853  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  30826854 atcagtcggatgtctggggatggtctgc 30826881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 22304251 - 22304024
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  22304251 tcatttgcaggcctcagaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 22304152  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22304151 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 22304052  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  22304051 atcagtcggatgtctggggatggtctgc 22304024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 31771088 - 31770869
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| || |||||||||||       |||||||    
T  31771088 tcatttgctggcctcggaagatctcctgaaagaggtggcaagatctgagggtgagacaccctagtgtaccatagcacatagccatc-------cgccatg 31770996  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| |||||||||||||  || |||||||  ||||||||| || ||   |||    
T  31770995 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaacgcctacacaatgtgaggcggtggcagctctacaac 31770896  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||||||||||| ||||||    
T  31770895 atccgtcggatgtctggggacggtctg 31770869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 2406059 - 2406222
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||| | |||||| |  ||||||||||||| || ||| ||||    
T  2406059 tcatttgctggcctcggaagatctcttggaagaggtggcaaaatctgagggtgagacacccttgtgtaccataacacatagccatccgtcgtccgtcatg 2406158  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| ||||||||||||    
T  2406159 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 2406222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 2407257 - 2407089
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||| |  ||||||||||       | |||||     
T  2407257 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatccgagggtgagacaccctagtgtaccataacacatagccat-------ctgccatt 2407165  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaat 191  Q
    ||| |||||||||||| |||||  |  || ||||||||||||||| ||||| ||||||||||||  ||||||||||    
T  2407164 tctgctctcctgcctgttcacctcgatcggccgccttaagcgtgtaagtgcggaagtcgacgaatgtctgcacaat 2407089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 26172936 - 26172776
Alignment:
Q  18 atttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtc 117  Q
    |||||| ||| |||||||||||||| ||| ||||||||| || ||||| ||||||||||||| |||||| |  |||||| ||||||||  |||| |||||    
T  26172936 atttgctggcgtcggaagatctcctcgaagaggtggcaaaatttgagg-tgagacaccctagtgtaccataacacatagacatccgccatccgcaatgtc 26172838  T
Q  118 tcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    | |||||||||||||| | ||    || ||||||||||||||||||||| ||||||||||||    
T  26172837 tgctctcctgcctgcttatcccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 26172776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 26440384 - 26440236
Alignment:
Q  94 tagccatccgccgcccgccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatgg 193  Q
    ||||||||||||  ||||||||||| |||||||||| ||||||||    |   |||||||||||||||||||| |||||||||||||   |||||||||     
T  26440384 tagccatccgccatccgccatgtctgctctcctgccggctcaccccaatcagtcgccttaagcgtgtgagtgcggaagtcgacgaacgcttgcacaatgt 26440285  T
Q  194 aaggcggtgggaggtccctaacatcagtcggatgtctggggatggtctg 242  Q
    ||||| ||||||||||   |||||||||| ||||||| |||||||||||    
T  26440284 aaggcagtgggaggtctacaacatcagtcagatgtctagggatggtctg 26440236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 18005475 - 18005638
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||||||||    | |||||   | ||||||||||| |||   | |||||    
T  18005475 tcatttggaggcctcggaaaatctcctggaagaagtggcaaaatctgagggtgagacacaacggtgtaccttcgtacatagccatctgccatacaccatg 18005574  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    | |||||| |||| |||||||||    || ||||||||||||||||||||| ||||||||||||    
T  18005575 tttcctctgctgcatgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 18005638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 24085850 - 24086013
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||| ||| |||||||  || | ||||||| |||||||||||||||||    | ||||||  | ||||||||||| |||   |||||||    
T  24085850 tcatttggaggcctccgaatatctcctacaagaagtggcaaaatctgagggtgagacacaacggtgtaccatcgtacatagccatctgccatacgccatg 24085949  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
     || ||||||||| |||||||||    || |||||||||| |||||||||| ||||||||||||    
T  24085950 cctgctctcctgcatgctcaccccaatcggccgccttaagtgtgtgagtgcggaagtcgacgaa 24086013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 32642912 - 32642750
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||||||| ||||||||||| | ||||||| || ||||||||||||||    | ||||||  | ||||||||||| | |   |||||||    
T  32642912 tcatttggaggcctcggaatatctcctggaagaagtggcaaaatttgagggtgagacacaacggtgtaccatcgtacatagccatctgtcatacgccatg 32642813  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| | ||||| | ||||||||||   |  ||||||||||||||||||| | ||||||||||||    
T  32642812 tctaccctcctacatgctcaccca-atcagccgccttaagcgtgtgagtacggaagtcgacgaa 32642750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 3384449 - 3384393
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagaca 73  Q
    |||||||| |||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  3384449 tcatttgctggcctcggaagatctc-tggaagagatggcaaaatctgagggtgagaca 3384393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 21603378 - 21603283
Alignment:
Q  43 ggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctcctctcctgcctgctcaccc 138  Q
    ||||||||||| || |||||||||||||||||| ||| |||||| || | |||||||||  ||  |  ||||||| ||||||||||  ||||||||    
T  21603378 ggaataggtggaaaaatctgagggtgagacaccgtagtgtaccatagtatatagccatcatccatcttccatgtcgcctctcctgctggctcaccc 21603283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 32641897 - 32641955
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacac 74  Q
    ||||||| ||||||||||| ||||||||||| | ||| ||| || ||||||||||||||    
T  32641897 tcatttggaggcctcggaatatctcctggaagaagtgacaaaatttgagggtgagacac 32641955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 41796075 - 41796302
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  41796075 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaagacatagccatcccccgcccgccatg 41796174  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41796175 tctcctctcctacctgctcaccccaggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 41796274  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  41796275 atcagtcggatgtctggggatggtctgc 41796302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 6178840 - 6179067
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  6178840 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 6178939  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6178940 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 6179039  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  6179040 atcagtcggatgtctggggatggtctgc 6179067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 49168532 - 49168305
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  49168532 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 49168433  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49168432 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 49168333  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  49168332 atcagtcggatgtctggggatggtctgc 49168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 31424761 - 31424534
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  31424761 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtgccacaggacatagccatccgccacccgccatg 31424662  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  31424661 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccttaac 31424562  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  31424561 atcagtcggatgtctggggatggtctgc 31424534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 1306170 - 1306399
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgc--ca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||    
T  1306170 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgcgcca 1306269  T
Q  114 tgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtcccta 213  Q
    ||| ||||||||| ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  1306270 tgtatcctctcctacctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtcccta 1306369  T
Q  214 acatcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||||    
T  1306370 acatcagtcggatgtctggggatggtctgc 1306399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 49093443 - 49093215
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgcc-at 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||    
T  49093443 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgcccat 49093344  T
Q  115 gtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaa 214  Q
    || ||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||    
T  49093343 gtatcctctcctgcctgctcaccccgagcgtccgccttaagcatgtgagtgcggaagtcgatgaacatctgcacaatggaaggcggggggaggtccctaa 49093244  T
Q  215 catcagtcggatgtctggggatggtctgc 243  Q
    |||||||||||||||| ||||||||||||    
T  49093243 catcagtcggatgtctagggatggtctgc 49093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 21018628 - 21018855
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||  ||||||||    
T  21018628 tcatttgcaggcctcggaagatctcctggaagaggtggcaagatcttagggtgagacaccctagtgtaccataggacatagccatccgccatccgccatg 21018727  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  21018728 tctcctctcctgcctgctcaccccgatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacacctgcataatgaaaggcggtgggaggtccctaac 21018827  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  21018828 atcagtcggatgtctggggatggtctgc 21018855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 40355453 - 40355679
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| ||||| |||| |||||||||    
T  40355453 tcatttgcaggtctcggaagatctcctggaataggtggcaagatctgagggttagacaccctagtgtaccatatgacattgccattcgccacccgccatg 40355552  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| |  |||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  40355553 tatcctctcctgcctgctcaccccgatcgtccgccttaatcgtgtgagtgcggaagtcgacgaacacctgcacaatggaagacggtgggaggtccctaac 40355652  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    | ||||||||||||| |||||||||||    
T  40355653 agcagtcggatgtctagggatggtctg 40355679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 30723877 - 30724026
Alignment:
Q  94 tagccatccgccgcccgccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatgg 193  Q
    |||||||||||| |||||||||| ||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  30723877 tagccatccgccacccgccatgtatcctctcctgcctgctcaccccgatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaattg 30723976  T
Q  194 aaggcggtgggaggtccctaacatcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30723977 aaggcggtgggaggtccctaacatcagtcggatgtctggggatggtctgc 30724026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 44677020 - 44677246
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||    ||||||    
T  44677020 tcatttacaggcctcgaaaaatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccatagcacacagccatccgccatgtgccatg 44677119  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    |||  ||||||||||||||||||    || ||||||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||||    |||    
T  44677120 tctgttctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaaggcggtgggaggtttacaac 44677219  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||||||| |||| ||||||||||||||    
T  44677220 atcagtcagatgcctggggatggtctg 44677246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 50278175 - 50277949
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||| || ||| |  |||||||||||||||  ||||||||    
T  50278175 tcatttgctggcctcggaagatctcctggaagaggtgacaaaatatgagggtgagacaccctagtgtgccataacacatagccatccgccatccgccatg 50278076  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || | ||||||||||||||||||| |||||||||||||  |||||||||   ||||||||| |  ||   |||    
T  50278075 tctgctctcctgcctgctcaccccaatcggctgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatatgaggcggtggcaactctacaac 50277976  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||||||||||| ||||||    
T  50277975 atccgtcggatgtctggggacggtctg 50277949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 37016633 - 37016846
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||  ||||||||    
T  37016633 tcatttgcaggcctcggaagatctactgaaagaggtggcaagatcttagggtgagacaccctagtgtaccatagcacatagccatccgccatccgccatg 37016732  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    |            ||||||||||    ||||||||||||| |||||||||| |||||| |||||| ||||||||||| |||||| |||||||||   |||    
T  37016733 t------------ctgctcaccccaatcgtccgccttaagtgtgtgagtgcggaagtcaacgaacgtctgcacaatgtaaggcgatgggaggtctacaac 37016820  T
Q  216 atcagtcggatgtctggggatggtct 241  Q
    ||| ||| ||||||||||||||||||    
T  37016821 atccgtcagatgtctggggatggtct 37016846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 8110172 - 8109946
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| | |||| || |||||||||||||||||||||| |||||| |  |||||||||||||||  |  |||||    
T  8110172 tcatttgctggcctcggaagatctcctggaagatgtggaaaaatctgagggtgagacaccctagtgtaccataacacatagccatccgccatcaaccatg 8110073  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||| |||||||||||||    || | ||||||||||| |||||||  |||||||||||   |||||||||   || |||||| || ||   |||    
T  8110072 tctgctctcttgcctgctcaccccaatcggctgccttaagcgtatgagtgcgaaagtcgacgaatgcctgcacaatctgagacggtggcagctctacaac 8109973  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||  |||||||||||||||| ||||||    
T  8109972 attcgtcggatgtctggggacggtctg 8109946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 10730030 - 10730256
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| |  |||||||| |||  |   || ||||    
T  10730030 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccttagtgtaccataacacatagccctccctcatacgtcatg 10730129  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||| |||||||||||||    || || |||| ||||||||||||| ||||||||||||   |||||||||   ||||||| | || ||   |||    
T  10730130 tctgctctcgtgcctgctcaccccaatcggcctccttcagcgtgtgagtgcggaagtcgacgaaagcctgcacaatctgaggcggtagcagctcaacaac 10730229  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||||||| ||| |||||||||||    
T  10730230 atccgtcggatttctagggatggtctg 10730256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 10943799 - 10944025
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| |  |||||||| |||  |   || ||||    
T  10943799 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccttagtgtaccataacacatagccctccctcatacgtcatg 10943898  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||| |||||||||||||    || || |||| ||||||||||||| ||||||||||||   |||||||||   ||||||| | || ||   |||    
T  10943899 tctgctctcgtgcctgctcaccccaatcggcctccttcagcgtgtgagtgcggaagtcgacgaaagcctgcacaatctgaggcggtagcagctcaacaac 10943998  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||||||| ||| |||||||||||    
T  10943999 atccgtcggatttctagggatggtctg 10944025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 30723777 - 30723847
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtacca 86  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30723777 tcatttacaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtacca 30723847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 50904377 - 50904158
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||| ||||||||| ||| || ||||| ||| |||||||||||||| ||||||| |||||| || |||||       |||| ||||||||    
T  50904377 tcatttgctggcctgggaagatcttctgaaagaggtgacaaaatctgagggtgagataccctagtgtaccatagcacata-------gccgtccgccatg 50904285  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||||| ||||||||||     || || |||||||||||||||||| ||| |||||||||  |||||||||   ||||||||| || ||   |||    
T  50904284 tctgctctcctacctgctcacctcaatcggccaccttaagcgtgtgagtgcggaaatcgacgaacgcctgcacaatatgaggcggtggaagctctacaac 50904185  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||| ||||||| ||||||    
T  50904184 atccgtcggatgcctggggacggtctg 50904158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 71958 - 71795
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||| ||| ||||||| ||| | ||| ||| |||||||||||||||||    | ||||||  | |||||||||||||||   |||||||    
T  71958 tcatttggaggcctcagaatatctcctagaagaagtgacaaaatctgagggtgagacacaacggtgtaccatcgtacatagccatccgccatacgccatg 71859  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||||||| |||||||||    || ||||||||||||||||||||| ||||||||||||    
T  71858 tctgctctcctgcatgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 71795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 50196351 - 50196225
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccct----agcgtaccacaggacatagccatccgccgcccgc 111  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||    || |||||| |  |||||||||||| ||  | ||    
T  50196351 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccctagtgagtgtaccataacacatagccatccaccatcagc 50196252  T
Q  112 catgtctcctctcctgcctgctcaccc 138  Q
    ||||||| ||||||| ||||| |||||    
T  50196251 catgtctgctctcctacctgcacaccc 50196225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 55278820 - 55278927
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||| || ||||||||||||| |||||||| | ||||||| ||| ||||||||| |||||||| |||||| || |||||||||||| ||  ||||||||    
T  55278820 tcattagctggcctcggaagatatcctggaagaagtggcaaaatcagagggtgagtcaccctagtgtaccatagtacatagccatcctccatccgccatg 55278919  T
Q  116 tctcctct 123  Q
    ||||||||    
T  55278920 tctcctct 55278927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 50020734 - 50020836
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||| ||||| ||||||||| || ||||||||||||||||||| |||||| |  | |||||||||||||  | ||||||    
T  50020734 tcatttgctggcctcggaagatctcttggaagaggtggcaaaatttgagggtgagacaccctagtgtaccataacatatagccatccgccatcagccatg 50020833  T
Q  116 tct 118  Q
    |||    
T  50020834 tct 50020836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 51686104 - 51685930
Alignment:
Q  68 gagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgcc 167  Q
    |||||||||||| |||||| |  ||||||||||| | |  |||||||||||  ||||||||||||||||||    || |||||||||||||||||||||     
T  51686104 gagacaccctagtgtaccataacacatagccatctgtcatccgccatgtctgttctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgca 51686005  T
Q  168 gaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaacatcagtcggatgtctggggatggtctg 242  Q
    ||||| ||||||   |||||||||   ||||||||| || ||   |||||| ||||||||||| |||| ||||||    
T  51686004 gaagttgacgaatgcctgcacaatctgaggcggtggcagctctacaacatccgtcggatgtctagggacggtctg 51685930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 46439038 - 46438956
Alignment:
Q  19 tttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatc 101  Q
    ||||| |||||||||||||||| ||||| ||||||||| || ||||||||||||||| ||| |||||| |  |||||||||||    
T  46439038 tttgctggcctcggaagatctcatggaagaggtggcaaaatttgagggtgagacaccttagtgtaccataacacatagccatc 46438956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 13624569 - 13624732
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| |||| || ||| ||||||||||| | |||| || |||||||||||||||||      ||||||    ||||||||||| |||   |||||||    
T  13624569 tcatttggaggcatcagaatatctcctggaagatgtggaaaaatctgagggtgagacacaacgatgtaccatcatacatagccatctgccatacgccatg 13624668  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||| ||| |||||||||    || ||||||||||||||||||||| ||||||||||||    
T  13624669 tctgctctcttgcatgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 13624732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 30706925 - 30706866
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacacc 75  Q
    |||||||  |||||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  30706925 tcatttgttggcctccgaagatctcctggaagaggtggcaaaatctgagggtgagacacc 30706866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 14317618 - 14317560
Alignment:
Q  28 ctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtacca 86  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||||| ||| ||||||    
T  14317618 ctcggaagatctcctggaagaggtggcaaaatatgagggtgagacaccttagtgtacca 14317560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 12891924 - 12891833
Alignment:
Q  25 ggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgt 116  Q
    ||||||| ||||||||| | || | ||||||| |||||||||||| ||||||||| ||||||| | | |||||||||| ||  |||||||||    
T  12891924 ggcctcgaaagatctcccgaaagaagtggcaaaatctgagggtgatacaccctagtgtaccaccgtatatagccatcctccatccgccatgt 12891833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 41931108 - 41931231
Alignment:
Q  112 catgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccc 211  Q
    ||||||| |||| ||||||||||||||    || || |||||| | ||||||||| ||||||||||||  ||||||||||   ||||||||| || ||      
T  41931108 catgtctgctctgctgcctgctcaccccaatcggcctccttaatcatgtgagtgcggaagtcgacgaaagtctgcacaatctgaggcggtggcagctcaa 41931207  T
Q  212 taacatcagtcggatgtctgggga 235  Q
     |||||||||||||||||| ||||    
T  41931208 caacatcagtcggatgtctaggga 41931231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 40886693 - 40886736
Alignment:
Q  43 ggaataggtggcaagatctgagggtgagacaccctagcgtacca 86  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||    
T  40886693 ggaataagtggcaaaatctgagggtgagacaccctagtgtacca 40886736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 46438954 - 46438914
Alignment:
Q  151 ttaagcgtgtgagtgccgaagtcgacgaacatctgcacaat 191  Q
    |||||||||||||||| ||||||||||||  ||||||||||    
T  46438954 ttaagcgtgtgagtgcggaagtcgacgaatgtctgcacaat 46438914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 1055547 - 1055320
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1055547 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 1055448  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1055447 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 1055348  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  1055347 atcagtcggatgtctggggatggtctgc 1055320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 23019323 - 23019550
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  23019323 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 23019422  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23019423 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 23019522  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  23019523 atcagtcggatgtctggggatggtctgc 23019550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 26662468 - 26662241
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  26662468 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 26662369  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26662368 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 26662269  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  26662268 atcagtcggatgtctggggatggtctgc 26662241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 22532 - 22759
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||    
T  22532 tcatttgcaggcctcggaatatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagtcatctgccacccgccatg 22631  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22632 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 22731  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  22732 atcagtcggatgtctggggatggtctgc 22759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 486769 - 486996
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  486769 tcatttgcaggcctcgaaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 486868  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  486869 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgataaacatctgcacaatggaaggcggggggaggtccctaac 486968  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  486969 atcagtcggatgtctggggatggtctgc 486996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 15033801 - 15034028
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  15033801 tcatttgcaggcctcggaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccatccgccatg 15033900  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15033901 tatcctctcctgcctgctcaccccgatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggtgggaggttcctaac 15034000  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  15034001 atcagtcggatgtctggggatggtctgc 15034028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 42482542 - 42482769
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||    
T  42482542 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggatatagccatccgccacccaccatg 42482641  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | |||| |||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42482642 tatcctttcctgcctgctcaccccgagcgtccgcctcaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 42482741  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  42482742 atcagtcggatgtctggggatggtctgc 42482769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 34367646 - 34367872
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| |||||||||||| || |||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||  ||||||||    
T  34367646 tcatttgcaggcctcagaagatctcctgaaagaggtggcaagatctgagggtgagataccctagtgtaccatagcacatagccatccgccatccgccatg 34367745  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || |||||||||||||||||||||  ||||||||||||  |||||||||| ||||||||||||||||   |||    
T  34367746 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcgaaagtcgacgaacgcctgcacaatgtaaggcggtgggaggtctacaac 34367845  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||||||||||||||| ||||||||||    
T  34367846 atcagtcggatgtctgaggatggtctg 34367872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 39604308 - 39604083
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||  ||| ||||    
T  39604308 tcatttgcaggcctcagaagatttcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccataggacatagtcatccgccatccgtcatg 39604209  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||||||| |||||||||    || || |||||||||||||||||| |||||||||||||  |||||||||| |||||||||| |||||   |||    
T  39604208 tctactctcctgcatgctcaccccaatcggccaccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaaggcggtggcaggtctacaac 39604109  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||||||||||| |||||||||||    
T  39604108 atccgtcggatgtct-gggatggtctg 39604083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 43214405 - 43214198
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||  || ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||       |||||||    
T  43214405 tcatttgcaggcctcataatatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccataggacatagccatc-------cgccatg 43214313  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    |            ||||||||||    ||| |||||||||||||||||||| |||||||||||||  |||||||||| |||||||| |||||||   |||    
T  43214312 t------------ctgctcaccccaatcgttcgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaaggcggtcggaggtctgcaac 43214225  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||||||||||||||||||||||||||    
T  43214224 atcagtcggatgtctggggatggtctg 43214198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 5301343 - 5301506
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |  |||||| ||||||||  ||  ||||    
T  5301343 tcatttgctggccttggaagatctcctggaagaggtggcaaaatctgagggtgagacaccctagtgtaccataacacatagtcatccgccatccatcatg 5301442  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||||||||||||| ||     || ||||||||||||||||||||| ||||||||||||    
T  5301443 tctgctctcctgcctgctcgcctcaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 5301506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 34819646 - 34819809
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| |||||| || |||||||||||| ||||| ||| |||||| |  |||||||||||||||  ||||||||    
T  34819646 tcatttgctggcctcggaagatctcctggaagaggtggaaaaatctgagggtgaaacaccttagtgtaccataacacatagccatccgccatccgccatg 34819745  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| |||   |||||||||||||    || | ||||||||||||||||||| ||||||||||||    
T  34819746 tctgctcctgtgcctgctcaccccaatcggctgccttaagcgtgtgagtgcggaagtcgacgaa 34819809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 41243120 - 41243327
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| || ||||||||||| ||               
T  41243120 tcatttgcaggccttggaagatctcctggaagaggtgacaaaatctgagggtgagacaccctagtgtaccatagcacatagccatctgc----------- 41243208  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
            | |||||||||||||    |||| ||||||||||||| ||||| |||||||||||||  |||||||||| |||||||||| |||||   |||    
T  41243209 --------catgcctgctcaccccaatcgtctgccttaagcgtgtcagtgcggaagtcgacgaacgcctgcacaatgtaaggcggtggcaggtctacaac 41243300  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||||||||||||||||||    
T  41243301 atctgtcggatgtctggggatggtctg 41243327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 35554609 - 35554453
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| |  |||||||||||       |||||||    
T  35554609 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccttagtgtaccataacacatagccatc-------cgccatg 35554517  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| || |  |||||||||||||    || ||||||||||||||||||||| ||||||||||||    
T  35554516 tctgcttttgtgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 35554453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 39831787 - 39832005
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||| |||||| |  |||||  ||||||||       |||    
T  39831787 tcatttgctggcctcggaagatctcttggaagaggtggcaaaatctgagggtgagacacc-tagtgtaccataacacataatcatccgcc-------atg 39831878  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| ||||||||||||   |||||||||   ||||||||  || ||   |||    
T  39831879 tctgctctcctgcctgctcaccccaatcgaccgccttaagcgtgtgagtgcggaagtcgacgaatgcctgcacaatctgaggcggtgacagctctacaac 39831978  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||||||||||||| || ||||||    
T  39831979 atcggtcggatgtctggagacggtctg 39832005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 40075736 - 40075892
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| |  ||||||||||       ||||||||    
T  40075736 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccttagtgtaccataacacatagccat-------ccgccatg 40075828  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||  |||||||||||||    ||   ||||||||||||||||||| ||||||||||||    
T  40075829 tctgctcttgtgcctgctcaccccaatcggttgccttaagcgtgtgagtgcggaagtcgacgaa 40075892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 5679882 - 5679723
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||  |||||||||||||| |||||| ||||||||| ||| |||||||||||||| |||  ||||| || ||||||||||||  |   |||||||    
T  5679882 tcatttgctagcctcggaagatctactggaagaggtggcaaaatccgagggtgagacaccgtagtataccatagcacatagccatccctcatacgccatg 5679783  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcga 175  Q
    ||| |||||||||||||||||||    ||  | |||||||||||||||||| ||||||||    
T  5679782 tctgctctcctgcctgctcaccccaatcgggctccttaagcgtgtgagtgcggaagtcga 5679723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 45132760 - 45132597
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| |  |||||||| |||  |   |||||||    
T  45132760 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccttagtgtaccataacacatagccctccctcatacgccatg 45132661  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    |||  ||| || |||||||||||    || || |||||||| ||||||||| ||||||||||||    
T  45132660 tctgatctgctacctgctcaccccaatcggcctccttaagcatgtgagtgcggaagtcgacgaa 45132597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 20859034 - 20858848
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||  |||||| |||||||||||||| |||||| || |||||||||||||||||||||| |||||| |  |||||||||||||||  |  |||||    
T  20859034 tcatttgcttgcctcgaaagatctcctggaagaggtggaaaaatctgagggtgagacaccctagtgtaccataacacatagccatccgccatcatccatg 20858935  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtg 202  Q
    | | ||||||||||||||||| |     | |||||||||| |||||||||  ||||| ||||||   |||||||||  |||||||||    
T  20858934 tatgctctcctgcctgctcactccaataggccgccttaagggtgtgagtgtggaagttgacgaatgcctgcacaatctaaggcggtg 20858848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 21176349 - 21176508
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||| |||||||| |||||| ||||| ||| ||||||||||| ||||||  || |||||| || |||||| |||||  |   |||||||    
T  21176349 tcatttgctggcctcagaagatcttctggaagaggtgtcaaaatctgagggtgtgacaccgcagtgtaccatagcacatagtcatccctcatacgccatg 21176448  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcga 175  Q
    ||| |||||||||||||||||||    ||| | |||||||||||||||||| ||||||||    
T  21176449 tctgctctcctgcctgctcaccccaatcgtgctccttaagcgtgtgagtgcggaagtcga 21176508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 30761310 - 30761406
Alignment:
Q  18 atttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccat 114  Q
    |||||| |||||||||||||||| ||||| |||||| || || ||||||||||||||||||| |||||| |  |||||| ||||||||  |||||||    
T  30761310 atttgctggcctcggaagatctcttggaagaggtggaaaaatttgagggtgagacaccctagtgtaccataacacatagtcatccgccatccgccat 30761406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 52103 - 51940
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| ||||||||||| ||||| || || | |||| || || ||||||||||||||    | ||||||  | ||||||||||| | |    ||||||    
T  52103 tcatttggaggcctcggaatatctcatgaaagaagtggaaaaatgtgagggtgagacacaacggtgtaccatcgtacatagccatctgtcatatgccatg 52004  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||| ||| |||||||||    || ||||||||||||||||||||| ||||||||||||    
T  52003 tctgctctcatgcatgctcaccccaatcgaccgccttaagcgtgtgagtgcggaagtcgacgaa 51940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 30761417 - 30761485
Alignment:
Q  111 ccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    |||||||| ||||||||| |||||||||    || || |||||||||||||||||| ||||||||||||    
T  30761417 ccatgtctgctctcctgcatgctcaccccaatcggccaccttaagcgtgtgagtgcggaagtcgacgaa 30761485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 41883561 - 41883334
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  41883561 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 41883462  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41883461 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 41883362  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  41883361 atcagtcggatgtctggggatggtctgc 41883334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 48406379 - 48406152
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  48406379 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccatg 48406280  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48406279 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 48406180  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  48406179 atcagtcggatgtctggggatggtctgc 48406152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 35607427 - 35607654
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  35607427 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacctgccatg 35607526  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35607527 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 35607626  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  35607627 atcagtcggatgtctggggatggtctgc 35607654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 9368438 - 9368665
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||    
T  9368438 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgccacccgccgtg 9368537  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  9368538 tatcctctcctgcctgcacaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgatgaacatctgcacaatggaaggcggtgggaggtccctaac 9368637  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  9368638 atcagtcggatgtctggggatggtctgc 9368665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 17460298 - 17460525
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  17460298 tcatttgcaggcctcggaagatctcctggaataggtggcaagatatgagggtgaaacaccctagtgtaccacaggacatagccatccgccacccgccatg 17460397  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17460398 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 17460497  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  17460498 atcagtcggatgtctggggatggtctgc 17460525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 17592916 - 17592689
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  17592916 tcatttgcaggcctcggaagatctcctggaataggtggcaagatatgagggtgaaacaccctagtgtaccacaggacatagccatccgccacccgccatg 17592817  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17592816 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 17592717  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  17592716 atcagtcggatgtctggggatggtctgc 17592689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 15071319 - 15071546
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||    
T  15071319 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatccgccacccgccatg 15071418  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| |  |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15071419 tatcctctcctgcctgctcaccccgatcgtccgccttaagcatgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 15071518  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  15071519 atcagtcggatgtctggggatggtctgc 15071546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 42504970 - 42505197
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| |||||| | |||||||||||||||| |||||||||    
T  42504970 tcatttgcaggcctcggaagatctcctggaataggcagcaagatatgagggtgagacaccctagtgtaccatatgacatagccatccgccacccgccatg 42505069  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42505070 tatcctctcctgcctgctcaccccgatcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatgaaaggcggtgggaggtccctaac 42505169  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  42505170 atcagtcggatgtctggggatggtctgc 42505197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 17837974 - 17837755
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||       |||    
T  17837974 tcatttgcaggcctcggaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccataggacatagccatccgcc-------atg 17837882  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||||||| |||||||||    |||| ||||||||||||| ||||| |||||||||||||  |||||||||||||||||||||||||||   |||    
T  17837881 tctgctctcctgcttgctcaccccaatcgtctgccttaagcgtgtaagtgcggaagtcgacgaacgcctgcacaatggaaggcggtgggaggtctgcaac 17837782  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||||||||||||||||||||||||||    
T  17837781 atcagtcggatgtctggggatggtctg 17837755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 10521851 - 10521625
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||  ||||||||    
T  10521851 tcatttgcaggtctcggaagatctcctggaagaggtggcaagatatgagggtgagacaccctagtgtaccatatgacatagccatccgccatccgccatg 10521752  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    ||||||||||||||||||||||||  ||||||||||||  ||| ||||||  ||||||| |||||||   |||    
T  10521751 tctgctctcctgcctgctcaccccaatcgtccgccttaagcgtgtgagtgcgaaagtcgacgaacgcctgtacaatgtcaggcggtcggaggtctgcaac 10521652  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||||||||||||||||||||||||||    
T  10521651 atcagtcggatgtctggggatggtctg 10521625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 5538587 - 5538812
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||  ||||||||    
T  5538587 tcatttgctggcctcgaaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccatagcacatagccatccgccatccgccatg 5538686  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || |||||||||| |||||||||| |||||||||||||  ||||||||||  ||||| ||| || ||   |||    
T  5538687 tctgctctcctgcctgctcaccccaatcggccgccttaagtgtgtgagtgcggaagtcgacgaacgcctgcacaatgtgaggcgatggcagctctacaac 5538786  T
Q  216 atcagtcggatgtctggggatggtct 241  Q
    |||  |||||||||| ||| ||||||    
T  5538787 atccatcggatgtctagggttggtct 5538812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 16680480 - 16680261
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||| |||||| |  |||||||||||||||  |||||| |    
T  16680480 tcatttgctggcctcggaagatctcatggaacaggtggcaaaatctgagggtgacacaccctagtgtaccataacacatagccatccgccatccgccaag 16680381  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| ||||||||||||   |||||||||   ||||||||| || ||   |||    
T  16680380 tctgctctcctgcctgctcaccctaatcggccgccttaagcgtgtgagtgcggaagtcgacgaatgcctgcacaatctgaggcggtggcagctcgacaac 16680281  T
Q  216 atcagtcggatgtctgggga 235  Q
    ||| ||||||||||||||||    
T  16680280 atccgtcggatgtctgggga 16680261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 17654716 - 17654497
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||| |||||| |  |||||||||||||||  |||||| |    
T  17654716 tcatttgctggcctcggaagatctcatggaacaggtggcaaaatctgagggtgacacaccctagtgtaccataacacatagccatccgccatccgccaag 17654617  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| ||||||||||||   |||||||||   ||||||||| || ||   |||    
T  17654616 tctgctctcctgcctgctcaccctaatcggccgccttaagcgtgtgagtgcggaagtcgacgaatgcctgcacaatctgaggcggtggcagctcgacaac 17654517  T
Q  216 atcagtcggatgtctgggga 235  Q
    ||| ||||||||||||||||    
T  17654516 atccgtcggatgtctgggga 17654497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 13323055 - 13322829
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| || |||| ||||||||||  ||||||||    
T  13323055 tcatttgctggcctcggaagatctcctggaagaggtggcaatatctgagggtgagacaccatagtgtaccatagaacatcgccatccgccatccgccatg 13322956  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || || ||||||||||||||||||  ||||||| ||||  ||||||||||  ||| ||||| || ||   |||    
T  13322955 tctgctctcctgcctgctcaccccaatcggcccccttaagcgtgtgagtgctaaagtcgatgaacgcctgcacaatgtgaggtggtggcagctctacaac 13322856  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||  ||||||||||||||| ||||||    
T  13322855 atctttcggatgtctggggacggtctg 13322829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 27450723 - 27450886
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||| |  ||| |||||||||||  ||||||||    
T  27450723 tcatttgctggcctcggaagatctcttggaagaggtggcaaaatctgagggtgagacaccctagtgtaccataacacacagccatccgccatccgccatg 27450822  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| |||||||||||||||||||    || ||||||||||||||||||||| ||||||||||||    
T  27450823 tctgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 27450886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 47522013 - 47522172
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |  |||||| ||||||||  ||||||||    
T  47522013 tcatttgctggcctcggaagatctcctggaataggtggcaaaatctgagggtgagacaccctagtgtaccataacacatagtcatccgccatccgccatg 47522112  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcga 175  Q
    ||| || ||||||||||||||||    || ||||||||| ||||| ||||| ||||||||    
T  47522113 tctgctttcctgcctgctcaccccaatcggccgccttaaacgtgtaagtgcggaagtcga 47522172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 34741742 - 34741523
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| || ||| ||||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||| |  |||||||||||||||       |||    
T  34741742 tcatttgctggtctcagaagatctcctggaagaggtggcaaaatctgaggttgagacagcctagtgtaccataacacatagccatccgcc-------atg 34741650  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    || | ||||||||||||||||||| |||||||||||||  ||||||||||  ||||||||| || ||   |||    
T  34741649 tctgctctcctgcctgctcaccccaatcggctgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtgaggcggtggcagctctacaac 34741550  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| ||| |||||||||||| ||||||    
T  34741549 atccgtcagatgtctggggacggtctg 34741523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 37343271 - 37343096
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||||||||||||||| || |||||| || |||||||||||||||||| ||| |||||| |  |||||||| |||  |    ||||||    
T  37343271 tcatttgctggcctcggaagatctcctgaaagaggtggaaaaatctgagggtgagacaccttagtgtaccataacacatagccctccctcatatgccatg 37343172  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaat 191  Q
    ||| |||| ||||||||||||||    || || |||||||||||||||||| |||||  |||||  ||||||||||    
T  37343171 tctgctctgctgcctgctcaccccaatcggcctccttaagcgtgtgagtgcggaagtatacgaatgtctgcacaat 37343096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 11630317 - 11630387
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtacca 86  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||    
T  11630317 tcatttgctggcctcggaagatctcctggaagaggtggcaaaatctgagggtgagacaccctagtgtacca 11630387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 47670239 - 47670402
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| |||||||| || ||||||||||| | |||||||  ||||||||||||||||  | ||||||||    ||||||||||  ||    |||||||    
T  47670239 tcatttggaggcctcgaaatatctcctggaagaagtggcaaattctgagggtgagacacaatggcgtaccatcatacatagccatatgctatacgccatg 47670338  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||||||||||||  |||||||||    || ||| |||||||| |||||||| ||||| ||||||    
T  47670339 tctcctctcctggatgctcaccccaatcggccgacttaagcgcgtgagtgcggaagttgacgaa 47670402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 16488394 - 16488281
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctga-gggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccat 114  Q
    |||||||| |||||||||||||||||||||| ||||||||  |||||| |||||| ||||| ||| |||||| |  ||||| ||||||     |||||||    
T  16488394 tcatttgctggcctcggaagatctcctggaagaggtggcacaatctgaggggtgaaacaccttagtgtaccataacacatatccatcccttatccgccat 16488295  T
Q  115 gtctcctctcctgc 128  Q
    |||| |||||||||    
T  16488294 gtctgctctcctgc 16488281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 11630427 - 11630522
Alignment:
Q  146 ccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaacatcagtcggatgtctggggatggtct 241  Q
    ||||||||||||||||||||| |||||| |||||   |||||||||   ||||||||| || ||   |||||| ||||||||||| |||| |||||    
T  11630427 ccgccttaagcgtgtgagtgcggaagtcaacgaatgcctgcacaatctgaggcggtggcagctctacaacatccgtcggatgtctagggacggtct 11630522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 9491989 - 9492059
Alignment:
Q  109 cgccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    |||||||||||||||||| | |||||||||     |  |||||||||||||||||||| ||||||||||||    
T  9491989 cgccatgtctcctctcctacatgctcaccccaattggtcgccttaagcgtgtgagtgcggaagtcgacgaa 9492059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 41734700 - 41734630
Alignment:
Q  109 cgccatgtctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    |||||||||| |||| ||||||||||||||    || || |||||||||||||||||| |||||| |||||    
T  41734700 cgccatgtctgctctgctgcctgctcaccccaatcggcctccttaagcgtgtgagtgcggaagtctacgaa 41734630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 41734749 - 41734713
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtg 52  Q
    |||||||| |||||||||||||||||||||| |||||    
T  41734749 tcatttgctggcctcggaagatctcctggaagaggtg 41734713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 13637036 - 13637263
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||    
T  13637036 tcatttgcaggcctcagaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatccgccacccgccatg 13637135  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  13637136 tatcctctcctgcctgctcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggagctccctaac 13637235  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  13637236 atcagtcggatgtctggggatggtctgc 13637263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 3729379 - 3729607
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||    
T  3729379 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccacaggacatagccatccgtcacccgccatg 3729478  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaa-ggcggtgggaggtccctaa 214  Q
    | ||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  3729479 tatcctctcctgcctactcaccccgagcgtccgccttaagcgtgtgagtgcggaagtcaacgaacatctgcacaatggaagggcggggggaggtccctaa 3729578  T
Q  215 catcagtcggatgtctggggatggtctgc 243  Q
    |||||||||||||||||||||||||||||    
T  3729579 catcagtcggatgtctggggatggtctgc 3729607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 26878730 - 26878510
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||       |||    
T  26878730 tcatttgcaggcctcagaagatctactggaataggtggcaagatctgagggtgagacaccccagtgtaccacaggacatagccattcgcc-------atg 26878638  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | ||||||||||| ||||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26878637 tatcctctcctgcttgctcaccccgagcttccgccttaagcgtgtgagtgcggaagtcgacgaacatctgcacaatggaaggcggggggaggtccctaac 26878538  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||||||||||||||||||||||||||||    
T  26878537 atcagtcggatgtctggggatggtctgc 26878510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 19159041 - 19158814
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||    
T  19159041 tcatttgcaggcctcggaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccatatgacatagccatccgccgtccgccatg 19158942  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    |||||||||||||||||| |||| |  |||||||||||| ||||||||||| |||||||||||||  |||||||||| ||||  ||||||| ||   |||    
T  19158941 tctcctctcctgcctgctgaccccgatcgtccgccttaatcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaagggagtgggagctctacaac 19158842  T
Q  216 atcagtcggatgtctggggatggtctgc 243  Q
    ||| || |||||| ||||||||||||||    
T  19158841 atccgtgggatgtttggggatggtctgc 19158814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 95132 - 95351
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||       |||    
T  95132 tcatttgcaggcctcagaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtactataggacatagccatccgcc-------atg 95224  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||| ||||||||||    | |||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||   |||    
T  95225 tctactctcctgtctgctcaccccaatcatccgccttaagcgtgtgagtgcggaagtcgacgaacgcctgcacaatgtaaggcggtgggaggtctacaac 95324  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    |||||||||||||||||||||||||||    
T  95325 atcagtcggatgtctggggatggtctg 95351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 31780697 - 31780916
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||       |||    
T  31780697 tcatttgcaggcctcggaagatctgctggaagaggtggcaagatctgagggtgagacaccctagtgtaccatagcacatagccatccgcc-------atg 31780789  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| ||||||||||| |||||||    || ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||   |||    
T  31780790 tctgctctcctgcctactcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaacgtctgcacaatgtaaggcggtgggaggtctacaac 31780889  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||||||||||||| |||||||||||||    
T  31780890 atcagtcggatgtttggggatggtctg 31780916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 22527016 - 22526797
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||       |||||||    
T  22527016 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagtgtaccataggacatagccatc-------cgccatg 22526924  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    | | |||||||||||||||||||    || |||||||||||||||||| || |||||||||||||  ||||||||||  ||||||||| || ||   |||    
T  22526923 tttgctctcctgcctgctcaccccaatcggccgccttaagcgtgtgagggcggaagtcgacgaacgcctgcacaatgtgaggcggtggcagctctacaac 22526824  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||||||||||| ||||||    
T  22526823 atcggtcggatgtctggggacggtctg 22526797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 52804888 - 52804662
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||| |||| |||||| || ||||||||||||||||||||||||||||| |||||| || ||||||||||||| |  || |||||    
T  52804888 tcatttgctggcctcggaatatctactggaagagctggcaagatctgagggtgagacaccctagtgtaccatagcacatagccatccgtcatcctccatg 52804789  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaac 215  Q
    ||| |||||||||||||||||||    |  |||||||||| |||||||||  ||||||||||||| |||||||||||  |||| |||| || ||   |||    
T  52804788 tctgctctcctgcctgctcaccccaatcagccgccttaagtgtgtgagtgtggaagtcgacgaacgtctgcacaatgtgaggcagtggcagctctacaac 52804689  T
Q  216 atcagtcggatgtctggggatggtctg 242  Q
    ||| |||||||||||||||| ||||||    
T  52804688 atccgtcggatgtctggggacggtctg 52804662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 47505350 - 47505198
Alignment:
Q  27 cctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctcctctcct 126  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||| |||  ||||||||||| |||||||    
T  47505350 cctcgaaagatctcctggaagaggtggcaagatctgagggtgagacaccctagtgtaccatagcacatagccatctgccatccgccatgtctgctctcct 47505251  T
Q  127 gcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||||||||||||    || |||||||||||||||||| || ||||||||||||    
T  47505250 gcctgctcaccccaatcggccgccttaagcgtgtgagcgcggaagtcgacgaa 47505198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 19522316 - 19522533
Alignment:
Q  18 atttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtc 117  Q
    |||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |  ||||||||||       ||||||||||    
T  19522316 atttgctggcctcgaaagatctcctggaagaggtggcaaaatctgagggtgagacaccctagtgtaccataacacatagccat-------ccgccatgtc 19522408  T
Q  118 tcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgggaggtccctaacat 217  Q
    | |||||||||||||||||||    || | |||||||||||||||| || ||||| |||||||  ||||||||||  ||||||||| || ||   |||||    
T  19522409 tgctctcctgcctgctcaccccaatcggctgccttaagcgtgtgagggcggaagttgacgaacgcctgcacaatgtgaggcggtggcagctctacaacat 19522508  T
Q  218 cagtcggatgtctggggatggtctg 242  Q
    | |||| ||||||||||| ||||||    
T  19522509 ccgtcgaatgtctggggacggtctg 19522533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 50617929 - 50618051
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||| || |||||| |||| |||  ||||||||    
T  50617929 tcatttgctggcctcggaagatctcctggaagaggttgcaagatctgagggtgagacaccctggtgtaccatagcacatagtcatctgccatccgccatg 50618028  T
Q  116 tctcctctcctgcctgctcaccc 138  Q
    ||| |||||||||||||||||||    
T  50618029 tctgctctcctgcctgctcaccc 50618051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 47660893 - 47660730
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| |  |||||| ||||||||  ||||||||    
T  47660893 tcatttgctggcctcagaagatctcctggaagaggtggcaaaatctgagggtgagacaccttagtgtaccataacacatagtcatccgccatccgccatg 47660794  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||| || | ||||||||    || || |||||||||||||||||| ||||||||||||    
T  47660793 tctgctctcgtgtcggctcaccccaatcggccaccttaagcgtgtgagtgcagaagtcgacgaa 47660730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 21143950 - 21143770
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||| || |||||||||||       |||| ||    
T  21143950 tcatttgctggcctcggaagaactcctggaagaggtggcaagatctgagggtgagacacccaagtgtaccatagcacatagccatc-------cgccttg 21143858  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtgg 203  Q
    ||| |||| |||| |||||||||    || || ||||||| |||||||||| |||||||||||||  ||||||||||  |||||||||    
T  21143857 tctgctcttctgcttgctcaccccaatcggccaccttaagtgtgtgagtgcggaagtcgacgaacgcctgcacaatgtgaggcggtgg 21143770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 45828596 - 45828433
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||  |||||||| || || ||||||||| |||||||||||| ||||| ||| |||||| |  |||||||||||| ||   |||||||    
T  45828596 tcatttgctggcctcataagatctcatgaaagaggtggcaaaatctgagggtgaaacaccttagtgtaccataacacatagccatcctccattcgccatg 45828497  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||  |||||||||||||    || ||||||||||||||||||||| ||||||||||||    
T  45828496 tctgctcttgtgcctgctcaccccaatcggccgccttaagcgtgtgagtgcggaagtcgacgaa 45828433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 11196883 - 11196697
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||||||||||||||| || ||||||||| ||  |||||||||||||| ||| |||||| |  |||||||| |||  |   || ||||    
T  11196883 tcatttgctggcctcggaagatctcctgaaagaggtggcaaaatacgagggtgagacaccttagtgtaccataacacatagccctccctcatacgacatg 11196784  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaatggaaggcggtg 202  Q
    ||| |||| ||||||||||||||    || ||||||||||| ||||||||| ||| ||||||||  ||||||||||  |||||||||    
T  11196783 tctgctctgctgcctgctcaccctaatcggccgccttaagcatgtgagtgcggaaatcgacgaatgtctgcacaatctaaggcggtg 11196697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 49855053 - 49855228
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    ||||||| |||||| |||| |||||| | || | ||||||| |||||||||||||||||    | ||||||  | ||||||||||| |||   |||||||    
T  49855053 tcatttggaggccttggaatatctcccgaaagaagtggcaaaatctgagggtgagacacaacggtgtaccatcgtacatagccatctgccatacgccatg 49855152  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaacatctgcacaat 191  Q
    ||| ||||||||| |||||||||    || |||||||||| ||||||||||  |||||||||||  ||||||||||    
T  49855153 tctgctctcctgcatgctcaccccaatcggccgccttaagtgtgtgagtgcgcaagtcgacgaaagtctgcacaat 49855228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 16269827 - 16269949
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||| ||||||  |||||||||||||| ||||||||  |||| ||||||||||| | ||| |||||| |  ||||||| ||||  |  ||||||||    
T  16269827 tcatttgctggcctcacaagatctcctggaagaggtggcacaatctaagggtgagacatcgtagtgtaccataacacatagcgatccctcatccgccatg 16269926  T
Q  116 tctcctctcctgcctgctcaccc 138  Q
    ||| |||||||||| ||||||||    
T  16269927 tctgctctcctgccggctcaccc 16269949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 23273427 - 23273506
Alignment:
Q  35 gatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccat 114  Q
    |||||||| ||| || |||||| |||||||||||||||||||||| |||||| |  |||||||||||||||  |||||||    
T  23273427 gatctcctagaagagatggcaaaatctgagggtgagacaccctagtgtaccataacacatagccatccgccatccgccat 23273506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 35256442 - 35256482
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaa 56  Q
    ||||||| ||||||||||| ||||||||||||| |||||||    
T  35256442 tcatttggaggcctcggaatatctcctggaataagtggcaa 35256482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 56579 - 56477
Alignment:
Q  36 atctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatgtctcctctcctgcctgctca 135  Q
    ||||||||||| |||| ||||||||||||||||||||||||| | |||||| || |||||| |||| |||  ||||||||||| ||||||||||||||||    
T  56579 atctcctggaagaggttgcaagatctgagggtgagacaccctggtgtaccatagcacatagtcatctgccatccgccatgtctgctctcctgcctgctca 56480  T
Q  136 ccc 138  Q
    |||    
T  56479 ccc 56477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 12371 - 12208
Alignment:
Q  16 tcatttgcaggcctcggaagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatccgccgcccgccatg 115  Q
    |||||||  |||||||||| || |||||||| | ||||||| |||||||||||||||||  | | ||||||    |||||||||||||||   |||||||    
T  12371 tcatttggtggcctcggaatatttcctggaagaagtggcaaaatctgagggtgagacacaatggtgtaccatcctacatagccatccgccatacgccatg 12272  T
Q  116 tctcctctcctgcctgctcacccagggcgtccgccttaagcgtgtgagtgccgaagtcgacgaa 179  Q
    ||| ||||||||| |||||||||    || || |||||||||||||||||| ||||||||||||    
T  12271 tctgctctcctgcatgctcaccccaatcgacctccttaagcgtgtgagtgcggaagtcgacgaa 12208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 22343 - 22411
Alignment:
Q  33 aagatctcctggaataggtggcaagatctgagggtgagacaccctagcgtaccacaggacatagccatc 101  Q
    |||||||||| ||| | ||||||| ||| |||| ||||||||||||| |||||| || | |||||||||    
T  22343 aagatctcctagaagaagtggcaaaatcagaggttgagacaccctagtgtaccatagtatatagccatc 22411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University