View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1092_high_1 (Length: 582)
Name: NF1092_high_1
Description: NF1092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1092_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 152 - 553
Target Start/End: Complemental strand, 19808795 - 19808390
Alignment:
| Q |
152 |
tgatagaaactggtaccaataggataaataactgaatattattgtttattattgaatattctctggggaaaggttccctaatcagagataaatatacaat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19808795 |
tgatagaaactggtaccaataggataaacaactgaatattattgtttattattgaatattctctggggaaaggtttcctaatcagagataaatatacaat |
19808696 |
T |
|
| Q |
252 |
cacacacttgtatagaattgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacaca |
351 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |
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| T |
19808695 |
cacacacttgtaatgaattgaaattacacagaaatattcacagtacacactcacaaggttccgagagccttgtgtctctccttttccaatgaaccacaca |
19808596 |
T |
|
| Q |
352 |
ataattctaagataactattaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaataactgctaaataataa |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19808595 |
ataattctaagataactattaagtctgactattctttatttatataacagaata--cacattctagaaaataactgcacacaataactgttaaataataa |
19808498 |
T |
|
| Q |
452 |
cttctgcacataaactggtaactgctcataaccgacacagaaactatcaagtca------gtttctgtttctattccttgaataatatttccttatgaga |
545 |
Q |
| |
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|| ||||||| ||||| ||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
19808497 |
ctactgcacagaaacttgtaactgtccataacagacacagaaactgccaagtcagtttctgtttctgtttctattccttgaataatatttctttatgaga |
19808398 |
T |
|
| Q |
546 |
ggtctaac |
553 |
Q |
| |
|
|||||||| |
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|
| T |
19808397 |
ggtctaac |
19808390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 161251 - 161198
Alignment:
| Q |
500 |
aagtcagtttctgtttctattccttgaataatatttccttatgagaggtctaac |
553 |
Q |
| |
|
||||||||||| |||| | ||||||| ||| |||||| |||||||||||||||| |
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|
| T |
161251 |
aagtcagtttcagtttttcttccttgcatagtatttctttatgagaggtctaac |
161198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 270 - 436
Target Start/End: Original strand, 15156766 - 15156933
Alignment:
| Q |
270 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15156766 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcaagagccttgtgtctctcctttcctaatgaaccacacaataattctaagataacta |
15156865 |
T |
|
| Q |
370 |
ttaagtctgacttttctttatttatataacagaatacacacattc-tagaaaataactgcacacaata |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
15156866 |
ttaagtctgacttttctttatttatataacagaatacacacattcttagaaaataacagcacacaata |
15156933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 15157578 - 15157499
Alignment:
| Q |
60 |
ttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatattttcttact |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
15157578 |
ttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatgttttcttact |
15157499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 270 - 436
Target Start/End: Complemental strand, 25555763 - 25555605
Alignment:
| Q |
270 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| ||||||||| ||||| || |
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|
| T |
25555763 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcaagatccttgtgtctctcctttcctaatgagccacacaatgattct--------ta |
25555672 |
T |
|
| Q |
370 |
ttaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
25555671 |
ttaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
25555605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 25548553 - 25548629
Alignment:
| Q |
63 |
cttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatattttcttact |
139 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
25548553 |
cttttggagtagtttgtttttggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttact |
25548629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 368 - 436
Target Start/End: Complemental strand, 25549376 - 25549308
Alignment:
| Q |
368 |
tattaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
25549376 |
tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
25549308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 270 - 436
Target Start/End: Original strand, 20011066 - 20011224
Alignment:
| Q |
270 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| ||||||||| ||||| || |
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|
| T |
20011066 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcaagagccttgtgtctttcctttcctaatgagccacacaatgattct--------ta |
20011157 |
T |
|
| Q |
370 |
ttaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
20011158 |
ttaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
20011224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 20011983 - 20011907
Alignment:
| Q |
63 |
cttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatattttcttact |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
20011983 |
cttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttact |
20011907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 270 - 436
Target Start/End: Original strand, 22621179 - 22621337
Alignment:
| Q |
270 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||||||| ||||||||| ||||| || |
|
|
| T |
22621179 |
tgaaatcacacagaaatattcacagtacatactcacaaggtttcaagaaccttgtgtctctcctttcctaatgagccacacaatgattct--------ta |
22621270 |
T |
|
| Q |
370 |
ttaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
22621271 |
ttaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
22621337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 34335351 - 34335278
Alignment:
| Q |
60 |
ttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatatttt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34335351 |
ttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatgtttt |
34335278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 22622098 - 22622022
Alignment:
| Q |
63 |
cttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatattttcttact |
139 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
22622098 |
cttttggagtagatttttattggaggcagaatgcttcagccggaacctaccttattatgttgttatgttttcttact |
22622022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 8998958 - 8999031
Alignment:
| Q |
60 |
ttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatatttt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8998958 |
ttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatgtttt |
8999031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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