View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1092_low_1 (Length: 612)
Name: NF1092_low_1
Description: NF1092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1092_low_1 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 29 - 612
Target Start/End: Original strand, 32641623 - 32642203
Alignment:
| Q |
29 |
agataatgctcttgaggttgtgcatccaacaccattgccattggtttctcttcattgttattgctattttggtcggaggatggtgacgatgggttggatg |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32641623 |
agataatgctcttgaggttgttcatccaacaccattgccattggtttctcttcattgttattgctattttggtcggaggatggtgacgatgggttggatg |
32641722 |
T |
|
| Q |
129 |
ttgatgacaacggcaaaggcgggaaagatacgccggcaacattgtcagagaacatggaaattaattggtcatcatccagtctatcaaatcctccaccacc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32641723 |
ttgatgacaacggcaaaggcgggaaagatacgccggcaacattgtcagagaacatggaaattaattggtcatcatccagtctatcaaatcctccaccacc |
32641822 |
T |
|
| Q |
229 |
gccaccaccactcctacagtcttcctcgagaaatgatgtctcgaggaaggcaatagagtcactggcagaccgcctgtgagcccctcgccttaccgaggaa |
328 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32641823 |
gccaccaccactcctgcagtcttcctcgagaaatgatgtctcgaggaaggcaatagagtcgctagcagaccgcctgtgagcccctcgccttaccgaggaa |
32641922 |
T |
|
| Q |
329 |
aaatcgaggaattcgtctatccatgatggtaattgttgtgatggtggtgatggttgatggtcaggagtattattctgggtcgtggccgtggtcgtggtgg |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32641923 |
aaatcgaggaattcgtctatccatgatggtaattgttgtgatggtggtgattgttgatggtcagaagtattattctgggtcgtggccgtggtcgtggtgg |
32642022 |
T |
|
| Q |
429 |
tggaggtgatgtttgacattgtggatgatgatgatgataccctttgttgaggaaaatatggacaattttgaggtatggtacttggtattttaggaggtaa |
528 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32642023 |
tggaggtgatgtttgacattgtg---gatgatgatgataccctttggtgaggaaaatatggccaattttggggtatggtacttggtattttaggaggtaa |
32642119 |
T |
|
| Q |
529 |
ctgtgccattaatcccaatgagtatgtgtgaccccaaatatagaggaagtttaaccgaaatttttgggattgtgttgtgttatg |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32642120 |
ctgtgccattaatcccaatgagtatgtgtgaccccaaatatagaggaagtttaaccgaaatttttggtattgtgttgtgttatg |
32642203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University