View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1092_low_10 (Length: 215)
Name: NF1092_low_10
Description: NF1092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1092_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 15913215 - 15913098
Alignment:
| Q |
96 |
tgtattttctttgaaatatgttctttcacaagaacatgatcagagctttgaagcatcatgtggctatcattttc--tctgagtggcgtgtttgctttttt |
193 |
Q |
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| T |
15913215 |
tgtattttctttgaaatatgttctttcacaagaacatgatcaaagctttgaagcatcatgtggctatcattttctgtgtgtgtggcgtgtttgctttgtt |
15913116 |
T |
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| Q |
194 |
gttattttacaacagccc |
211 |
Q |
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| T |
15913115 |
gttattttacaacagccc |
15913098 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 38254107 - 38254156
Alignment:
| Q |
121 |
tcacaagaacatgatcagagctttgaagcatcatgtggctatcattttct |
170 |
Q |
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| T |
38254107 |
tcacaagaacatgatcagagttttgtagcatcatgtggctatcattttct |
38254156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 38227379 - 38227426
Alignment:
| Q |
123 |
acaagaacatgatcagagctttgaagcatcatgtggctatcattttct |
170 |
Q |
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| T |
38227379 |
acaagaacatgatcagagttttgaagcatcatgtggctaacatcttct |
38227426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 38248994 - 38249041
Alignment:
| Q |
123 |
acaagaacatgatcagagctttgaagcatcatgtggctatcattttct |
170 |
Q |
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| T |
38248994 |
acaagaacatgatcatagttttgaagcatcatgtggctaccatcttct |
38249041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 38214954 - 38215006
Alignment:
| Q |
121 |
tcacaagaacatgatcag---agctttgaagcatcatgtggctatcattttct |
170 |
Q |
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| T |
38214954 |
tcacaagaacatgatcagcagagttttgaagcatcctgtggctatcattttct |
38215006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 17434509 - 17434556
Alignment:
| Q |
123 |
acaagaacatgatcagagctttgaagcatcatgtggctatcattttct |
170 |
Q |
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|||||||||| ||||||| ||||||||||| | ||||||||||||||| |
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| T |
17434509 |
acaagaacataatcagagttttgaagcatcctatggctatcattttct |
17434556 |
T |
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