View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1092_low_2 (Length: 596)
Name: NF1092_low_2
Description: NF1092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1092_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 3219080 - 3218801
Alignment:
| Q |
29 |
atctaatacccatccatttcaagacattaagccggattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaa |
128 |
Q |
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| T |
3219080 |
atctaatacccatccatttcaagacattaaactggattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaa |
3218981 |
T |
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| Q |
129 |
gctgcatagtaaaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatgtcatttggagatttttggaacaccaattctacaagttctt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3218980 |
gctgcatagtaaaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatatcatttggagatttttggaacaccaattctacaagttctt |
3218881 |
T |
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| Q |
229 |
gcatttttgactctgtctctgaattggtgattttttcatgtgtattgctgctgctactcttaacctggtaattgttatcc |
308 |
Q |
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| T |
3218880 |
gcatttttgactctgtctctgaattggtgattttttcatgtgtattgctgctgctactcttaacctggtaattgttatcc |
3218801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 3236769 - 3236499
Alignment:
| Q |
40 |
atccatttcaagacattaagccggattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagta |
139 |
Q |
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| T |
3236769 |
atccatttcaagacattaaactggattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagta |
3236670 |
T |
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| Q |
140 |
aaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatgtcatttggagatttttggaacaccaattctacaagttcttgcatttttgac |
239 |
Q |
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| T |
3236669 |
aaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatatcatttggagatttttggaacaccaattctacaagttcttgcatttttgac |
3236570 |
T |
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| Q |
240 |
tctgtctctgaattggtgattttttcatgtgtattgctgctgctactcttaacctggtaattgttatccac |
310 |
Q |
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| T |
3236569 |
tctgtctctgaattggtgattttttcatgtgtattgctgctgctactcttaacctggtaattgttatccac |
3236499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 335 - 548
Target Start/End: Complemental strand, 3218771 - 3218558
Alignment:
| Q |
335 |
gtataccaaactaatcaacaaatgatatactaccatggtccatcctagttgagtttactttactaaattagttcataaatcatatctatgtaannnnnnn |
434 |
Q |
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| T |
3218771 |
gtatatcaaactaatcaacaaatgatatactaccatggtccatcctagttgagtttactttactaaattagttcataaatcatatctatgtaatttttta |
3218672 |
T |
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| Q |
435 |
nnnnnnnnaggtagaacatctatttatacattagcatatgcttctttgatttgtttatatatgtacaagtggggaagttaaaaagaatgcattcagagca |
534 |
Q |
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| T |
3218671 |
tttgttttaggtagaacatctatttatacattagcatatgcttctttgatttgtttatacatgtacaagtggggaagttaaaaaaaatgcattaagagca |
3218572 |
T |
|
| Q |
535 |
tgcaatgaataaaa |
548 |
Q |
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|||||||| ||||| |
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| T |
3218571 |
tgcaatgagtaaaa |
3218558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 63 - 243
Target Start/End: Original strand, 3175271 - 3175451
Alignment:
| Q |
63 |
gattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagtaaaaactccttgcaactgtaaaga |
162 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
3175271 |
gattaaacaactttatcaaacagaactttggcaatatgaaagttgatggttctagaatcacagaaagctgcatagtaaaaactctttgcaactgtgaaaa |
3175370 |
T |
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| Q |
163 |
aagtattcttgatattgaaatcaatgtcatttggagatttttggaacaccaattctacaagttcttgcatttttgactctg |
243 |
Q |
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| T |
3175371 |
aagtattcttgatattgaaatcaatgtcatttggagattgttggaacaccaattctacaagttcttgcatttttgactctg |
3175451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 457 - 589
Target Start/End: Complemental strand, 3236401 - 3236266
Alignment:
| Q |
457 |
tttatacattagcatatgcttctttgatttgtttatatatgtacaagtggggaagttaa---aaagaatgcattcagagcatgcaatgaataaaaaatta |
553 |
Q |
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| T |
3236401 |
tttatacattagcatatgcttctttcatttgtttatatatgtacaagtggggaagttaattaaaagaatgcattcagagcatgcaatgaataaaaaaata |
3236302 |
T |
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| Q |
554 |
tataacatttggaatgtagctcatttccctatgata |
589 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3236301 |
tataacatttggaatgtagctcatttccctatgata |
3236266 |
T |
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