View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1092_low_4 (Length: 490)
Name: NF1092_low_4
Description: NF1092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1092_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 9150195 - 9149730
Alignment:
| Q |
1 |
tctcacaatggctcttcacgctgggtgtatgtttagattttcattatggccaaaaatttcacataaatgacaaattgttctactaagtgcatattcaacg |
100 |
Q |
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| T |
9150195 |
tctcacaatggctcttcacactgggtgtatgtttagattttcattatggccaaaaatttcacataaatgacaaattgttctactaagtgcatattcaacg |
9150096 |
T |
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| Q |
101 |
cnnnnnnnnnnnnnnnnnnnnnttgtacatatttggtataaggtgggcttgtcaaaatcatgatgtcactgtgactttgcaaaaactataaagagttgtt |
200 |
Q |
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| T |
9150095 |
caaaaaaaaaaaaaaaaaaa--ttgtgcatatttggtataaggtggacttgtcaaaatcatgatgtcactgtgactttgcaaaaactataaagagttatt |
9149998 |
T |
|
| Q |
201 |
ttttaaaattacacccgattcacaatgttgttttgacaaatccacatatatatcaaacataagtgtaatttggataagtgtactttttgtccaaaactat |
300 |
Q |
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| T |
9149997 |
ttttaaaattacacccgattcacaatgttgttttgacaaatccacatatatatcaaacataagtgtaatttggataagtgtactttttgtccaaaactat |
9149898 |
T |
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| Q |
301 |
cttgtcttgcttgaatatgtcaatttcaaacgtgaatccaaacatacacccgttaatttcttacattaattgtatgaatatgttggtatctttcataaat |
400 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9149897 |
cttatcttgcctgaatatgtcaatttcaaacgtgaatccaaacatacacccgttaatttcttacattaattgtatgaatatgttggtatctttcataaat |
9149798 |
T |
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| Q |
401 |
tatactaggtttttgtaaatattcccatttgactgcttcaacaattaatgtctcaaatttattactct |
468 |
Q |
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| T |
9149797 |
tatactaggtttttgtaaatattcccatttgactgcttcaacaattaatgtctcaaatttattactct |
9149730 |
T |
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