View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1092_low_5 (Length: 321)
Name: NF1092_low_5
Description: NF1092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1092_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 3179119 - 3179264
Alignment:
| Q |
97 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3179119 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3179218 |
T |
|
| Q |
197 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtg |
242 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3179219 |
gtcttgtttatgatattcaaccagaagattacgttccttatctgtg |
3179264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 97 - 242
Target Start/End: Complemental strand, 3239721 - 3239576
Alignment:
| Q |
97 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3239721 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3239622 |
T |
|
| Q |
197 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtg |
242 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3239621 |
gtcttgtttatgatattcaaccagaagattacgttccttatctgtg |
3239576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 97 - 242
Target Start/End: Complemental strand, 3220689 - 3220544
Alignment:
| Q |
97 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
196 |
Q |
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|||||||||||||| |||||| |||||||||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220689 |
aacctcggcgggatacctatactggatcaaaggcttttgccggctgatatttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3220590 |
T |
|
| Q |
197 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3220589 |
gtcttgtttatgatattgaaccagaagattatgttccttatctgtg |
3220544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 3225674 - 3225532
Alignment:
| Q |
97 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
196 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||| || |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225674 |
aacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3225575 |
T |
|
| Q |
197 |
gtcttgtttatgatattgaaccagaagattacgttccttatct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3225574 |
gtcttgtttatgatattgaaccagaagattatgttccttatct |
3225532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 3230922 - 3230780
Alignment:
| Q |
97 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
196 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||| || |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3230922 |
aacctcggcgggatacctatactggatcaaaggcttttgccggctgatattttcgctactggtgcaggacatgttaatccttttaaagctaatgatcctg |
3230823 |
T |
|
| Q |
197 |
gtcttgtttatgatattgaaccagaagattacgttccttatct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3230822 |
gtcttgtttatgatattgaaccagaagattatgttccttatct |
3230780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 3201844 - 3201714
Alignment:
| Q |
112 |
cctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgata |
211 |
Q |
| |
|
||||| ||||| ||||| ||| ||| |||||||| ||||| |||||||| ||||||||||| ||| ||||| || ||||| || ||||||||||||| |
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| T |
3201844 |
cctattttggaccaaaggcttctaccagctgatgtatttgccactggtgctggacatgttaacccttcaaaagcaaacgatccgggacttgtttatgata |
3201745 |
T |
|
| Q |
212 |
ttgaaccagaagattacgttccttatctgtg |
242 |
Q |
| |
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||||| || | ||||| ||||||||| |||| |
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| T |
3201744 |
ttgaaacaaatgattatgttccttatttgtg |
3201714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 3207818 - 3207688
Alignment:
| Q |
112 |
cctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgata |
211 |
Q |
| |
|
||||| ||||| |||||| || ||| |||||||| ||||| |||||||| |||||||| || ||| ||||| |||||||| || ||||||||||||| |
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| T |
3207818 |
cctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgata |
3207719 |
T |
|
| Q |
212 |
ttgaaccagaagattacgttccttatctgtg |
242 |
Q |
| |
|
||||| || | ||||| ||||||||| |||| |
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|
| T |
3207718 |
ttgaaacaaatgattatgttccttatttgtg |
3207688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 3215753 - 3215630
Alignment:
| Q |
113 |
ctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatat |
212 |
Q |
| |
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|||| ||||| ||||||||| ||| |||||| | ||||| |||||||| |||||||| || ||| ||||| || ||||| || |||||||||||||| |
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| T |
3215753 |
ctattttggaccaaagacttaaaccagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatat |
3215654 |
T |
|
| Q |
213 |
tgaaccagaagattacgttcctta |
236 |
Q |
| |
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||||||| | ||||| |||||||| |
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|
| T |
3215653 |
tgaaccaaatgattatgttcctta |
3215630 |
T |
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