View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10930_high_2 (Length: 524)
Name: NF10930_high_2
Description: NF10930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10930_high_2 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0039 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Original strand, 24207 - 24705
Alignment:
| Q |
11 |
cagagagtggttgccacttttaaacctcgccattccaagctgcgtttctgtctgcttggaatggtggtggtatgaattcatgactatattttgtggctac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24207 |
cagagagtggttgccacttttaaacctcgccattccaagctgcgtttctgtctgcttggaatggtggtggtatgaatttatgactatattttgtggctac |
24306 |
T |
|
| Q |
111 |
ttaagcaatccaagatcaagtgttgcatcaatgggg-tgttaatccaaattacttcattgatgtacatttttccttattcactaagcaatagtgtttcaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24307 |
ttaagcaatccaagatcaagtgttgcatcaatgggggtgttaatccaaattacttcacttatgtacatttttccttactcactaagcaatagtgtttcaa |
24406 |
T |
|
| Q |
210 |
caagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaatttcaggactttctttcagcttcatttgtggagtgtttgcatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24407 |
caagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaatttcaggactttctttcagcttcatttgtggagtgtttgcatt |
24506 |
T |
|
| Q |
310 |
tattttcactctttgcgtaagaaacatgtgggctagtatgttcacaacggataaagagatcattactttaacatcaatggttttgccaattataggtttg |
409 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24507 |
tattttcactctttgtgtaagaaacatgtgggctagtatgttcacaaaagacaaagaaatcattgctttaacatcaatggttttgccaattataggttta |
24606 |
T |
|
| Q |
410 |
tgtgaattaggtaactgtcctcaaacaacaggctgtggtgttcttagaggaacagcaaggcctaaagttggtgctaatatcaacttaggttgtttttat |
508 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24607 |
tgtgaactaggtaactgtcctcaaacaacaggctgtggtgttcttagaggaacagcaaggcctaaagttggtgctaatatcaacttaggttgtttttat |
24705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 507
Target Start/End: Complemental strand, 45845721 - 45845413
Alignment:
| Q |
199 |
tagtgtttcaacaagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaatttcaggactttctttcagcttcatttgtgga |
298 |
Q |
| |
|
||||||||| || ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| || |
|
|
| T |
45845721 |
tagtgtttccactagagttggtaacaaacttggtgctcaaaagccatcaaaagcaaaactttcagcaattgtaggactcacttgtagcttcattttaggt |
45845622 |
T |
|
| Q |
299 |
gtgtttgcatttattttcactctttgcgtaagaaacatgtgggctagtatgttcacaacggataaagagatcattactttaacatcaatggttttgccaa |
398 |
Q |
| |
|
|||||||| || |||| || | || |||||||| |||||||| |||||||| || |||||||| || | | ||||| | || || || |
|
|
| T |
45845621 |
gtgtttgctttggtttttgctgtaatggttagaaacatttgggctagcatgttcactgaagacaaagagataataaaaattacatctttagtgttacctt |
45845522 |
T |
|
| Q |
399 |
ttataggtttgtgtgaattaggtaactgtcctcaaacaacaggctgtggtgttcttagaggaacagcaaggcctaaagttggtgctaatatcaacttagg |
498 |
Q |
| |
|
| ||||| | |||||| | || || ||||| ||||||||||| ||||| || | ||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
45845521 |
taatagggctatgtgaacttggaaattgtccacaaacaacaggttgtggggtgttaagaggaacagcaaggcctaaagtaggtgcaaatatcaattttgg |
45845422 |
T |
|
| Q |
499 |
ttgttttta |
507 |
Q |
| |
|
||||||||| |
|
|
| T |
45845421 |
ttgttttta |
45845413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 43102324 - 43102283
Alignment:
| Q |
45 |
ccaagctgcgtttctgtctgcttggaatggtggtggtatgaa |
86 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
43102324 |
ccaagctgcgtttccgtttgtttggaatggtggtggtatgaa |
43102283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University