View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10930_high_6 (Length: 247)
Name: NF10930_high_6
Description: NF10930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10930_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 11640089 - 11639871
Alignment:
| Q |
13 |
gaagatttgattttgccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaaccc |
112 |
Q |
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| T |
11640089 |
gaagatttgattttgccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaaccc |
11639990 |
T |
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| Q |
113 |
atactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaacatcttcacg |
212 |
Q |
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| T |
11639989 |
atactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggacttgtggcgttcaagttcgtctttgatgtattgaacatcttcacg |
11639890 |
T |
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| Q |
213 |
gactcctctttgtagattt |
231 |
Q |
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||||||||||||||||||| |
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| T |
11639889 |
gactcctctttgtagattt |
11639871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 11621597 - 11621380
Alignment:
| Q |
14 |
aagatttgattttgccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaaccca |
113 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |
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| T |
11621597 |
aagatctgatttttccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaataactctaacccttttaaccca |
11621498 |
T |
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| Q |
114 |
tactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaacatcttcacgg |
213 |
Q |
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| T |
11621497 |
tactttgagttcagggtctttgtcttccattgaatcagctgccatcaagatggccttgtggcgttcgagttcgtcgttgatgtattgaacatcttcacgg |
11621398 |
T |
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| Q |
214 |
actcctctttgtagattt |
231 |
Q |
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| T |
11621397 |
acgcctctttgtagattt |
11621380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 11605990 - 11606190
Alignment:
| Q |
28 |
ccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaacccatactttgagttcag |
127 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11605990 |
ccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttcag |
11606089 |
T |
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| Q |
128 |
ggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaacatcttcacggactcctctttgtag |
227 |
Q |
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| T |
11606090 |
gatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtag |
11606189 |
T |
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| Q |
228 |
a |
228 |
Q |
| |
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| |
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| T |
11606190 |
a |
11606190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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