View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10930_low_4 (Length: 336)
Name: NF10930_low_4
Description: NF10930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10930_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 12157835 - 12157520
Alignment:
| Q |
1 |
tgttttcacacgtatattgatattgacagtatatttgtgttttcacatgcatgttgaatattcaaccatgcatttcatcattccatgaatttacaatata |
100 |
Q |
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| T |
12157835 |
tgttttcacacgtctattgatattgacagtatatttgtgttttcacatgcatgttgaatattcaaccatgcatttcatcatttcatgaatttacaatata |
12157736 |
T |
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| Q |
101 |
ggaatacaatgattaaattgtacgagatataaaaataggctcaatgaaactaatatagactgagttgattagttgtgttatgaaggtgtgctcaaacaac |
200 |
Q |
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| T |
12157735 |
ggaatacaatgattaaattgtacgagatataaaaataggctcaatgaaactaatatagattgagttgattagttgtgttatgatggt---ctcaaacaac |
12157639 |
T |
|
| Q |
201 |
atgcaaagtaagttgggtctaaaaacaaccacatgtgaagatggtgaaaagtggaccaaggtgaccgttaagcttgatttgaagatgtttaacatgaaat |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12157638 |
atgcaaagtaagttgggtctaaaaacaatcacatgtgaagatggtgaaaagtggaccaaggtgatcgttaagcttgatttgaagatgtttaacatgaaat |
12157539 |
T |
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| Q |
301 |
gttttgaagacaacattgt |
319 |
Q |
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|||||||||| |||||||| |
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| T |
12157538 |
gttttgaagataacattgt |
12157520 |
T |
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