View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_high_11 (Length: 348)
Name: NF10931_high_11
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 43806010 - 43806338
Alignment:
| Q |
1 |
tttagaaaggcctttagacataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaagatagttttttgcatct |
100 |
Q |
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| T |
43806010 |
tttagaaaggcctttagacataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaagatagttttttgcacct |
43806109 |
T |
|
| Q |
101 |
gcagttcattttaaaaataaatacgcattatcaagccagaaagtcaaacaccatttgaactacatgccacaagctacaagccacaagcttaacacatagt |
200 |
Q |
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| T |
43806110 |
gcagttcattttaaaaataaatacgcattatcaagccagaaagtcaaacaccatttgaactacatgccacaagctacaagccacaagcttaacacatagt |
43806209 |
T |
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| Q |
201 |
atgtgagatctgaaaaataaattaatcgctatgacaatcaaatggaaaataagttgtaagtaatcatcattctatgaatataacctagattaacagagca |
300 |
Q |
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| T |
43806210 |
atgtgagatctgaaaaataaattaatcgctatgacaatcaaatggaaaataagttgtaagtaatcatcattctatgaatataacctagattaacagagca |
43806309 |
T |
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| Q |
301 |
ttggcagggttacataacaaccatggaac |
329 |
Q |
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| T |
43806310 |
ttggcagggttacataacaaccatggaac |
43806338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 34845542 - 34845627
Alignment:
| Q |
18 |
acataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaagatagttttttgcatctgca |
103 |
Q |
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| T |
34845542 |
acataccaccaaatgcccacttgtgggaagttgcatttgagtgaaggaacatggggtgtacatgtagatagtttttcccatctgca |
34845627 |
T |
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