View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_high_13 (Length: 323)
Name: NF10931_high_13
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 38381260 - 38380963
Alignment:
| Q |
12 |
aagaaagtactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacat |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38381260 |
aagaaagtactaagagcattgaaccggagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacat |
38381161 |
T |
|
| Q |
112 |
caattaaatcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
211 |
Q |
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| T |
38381160 |
ctattaaatcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
38381061 |
T |
|
| Q |
212 |
taatcctaagatcaacctagttgtttaccgtcttattgctaaggaaaacatagtagaattggaggaattaacggtaattggcgacgaaatgttggaag |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | ||||||||| || ||||||||||||| |
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| T |
38381060 |
taatcctaagatcaacctagttgtttaccgtcttattgctaaggaaaacatagaagaattggaggagttcatggtaattggtgatgaaatgttggaag |
38380963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 38398889 - 38398592
Alignment:
| Q |
12 |
aagaaagtactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacat |
111 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38398889 |
aagaaaatactaagagcattgaaccgcagagtacttgaaattgctccatgttctgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacat |
38398790 |
T |
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| Q |
112 |
caattaaatcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
211 |
Q |
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|||| | |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398789 |
caataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
38398690 |
T |
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| Q |
212 |
taatcctaagatcaacctagttgtttaccgtcttattgctaaggaaaacatagtagaattggaggaattaacggtaattggcgacgaaatgttggaag |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38398689 |
taatcctaagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaag |
38398592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 38390135 - 38389829
Alignment:
| Q |
12 |
aagaaagtactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaaca- |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38390135 |
aagaaagtactaagagcattgaaccgcagagtactcgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgccgaaaccaacac |
38390036 |
T |
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| Q |
111 |
--------tcaattaaatcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacg |
202 |
Q |
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| T |
38390035 |
taacaacatcaataacattagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacg |
38389936 |
T |
|
| Q |
203 |
agcgatgaataatcctaagatcaacctagttgtttaccgtcttattgctaaggaaaacatagtagaattggaggaattaacggtaattggcgacgaaatg |
302 |
Q |
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| |||||||||||||| ||||||||||||||||||| ||||| || ||| | ||||||||| |||| ||||||| |||| ||||||||| || |||||| |
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| T |
38389935 |
aatgatgaataatcctaggatcaacctagttgtttactgtcttgtttctaggaaaaacatagcagaagtggaggagttaatggtaattggtgatgaaatg |
38389836 |
T |
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| Q |
303 |
ttggaag |
309 |
Q |
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||||||| |
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| T |
38389835 |
ttggaag |
38389829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 37841008 - 37841296
Alignment:
| Q |
12 |
aagaaagtactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacat |
111 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||| |
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| T |
37841008 |
aagaaagtactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaaccaacat |
37841107 |
T |
|
| Q |
112 |
caattaaatcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
211 |
Q |
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|| |||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
37841108 |
ca---------gaatattctaatactcgattagccatcatatatttaggcggaaatgacgatgatgaagaggtcttatgtttagcaaaaagagcaatgaa |
37841198 |
T |
|
| Q |
212 |
taatcctaagatcaacctagttgtttaccgtcttattgctaaggaaaacatagtagaattggaggaattaacggtaattggcgacgaaatgttggaag |
309 |
Q |
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||||| || ||||||||| |||||||| |||||| |||||||||| ||||| | |||||||||||| |||| ||||||||| || ||||||||||||| |
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| T |
37841199 |
taatcataggatcaacctggttgtttatcgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaag |
37841296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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