View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_high_20 (Length: 249)
Name: NF10931_high_20
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 46718954 - 46718764
Alignment:
| Q |
49 |
aataatagagagaaagaaagttatagtgagagcatgagataatttctccaacaattatcataaaattgttgtggaaatattatttctcttgttttatact |
148 |
Q |
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| T |
46718954 |
aataatagagagaaagaaagttatagtgagagcatgagagaatttctccaacaattatcataaaattgttgtgaaaatattatttctcttgttttatact |
46718855 |
T |
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| Q |
149 |
actacatttagaataaaatcaattaaaaaacacttataccgtaatctagtcaaacaagataacatttggccataactccctatcctttctt |
239 |
Q |
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| T |
46718854 |
actacatttagaataaaatcaattaaaaaacacttataccgtaatctagtcaaacaagataacatttggccataactccctatcctttctt |
46718764 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 37786718 - 37786747
Alignment:
| Q |
39 |
attgaacaaaaataatagagagaaagaaag |
68 |
Q |
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| T |
37786718 |
attgaacaaaaataatagagagaaagaaag |
37786747 |
T |
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