View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_high_4 (Length: 484)
Name: NF10931_high_4
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 192 - 468
Target Start/End: Original strand, 45519569 - 45519845
Alignment:
| Q |
192 |
gttggaattgagtggttgagtataagggaatagaaaaaatacaagtatgttattggtttaatcaaaataatagtgtatcatgtgtaatggtttggtgaga |
291 |
Q |
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| T |
45519569 |
gttggaattgagtggttgagtataagggaatagaaaaaatacaagtatgttattggtttaatcaaaagaataatgtattatgtgtaatggtttggtgaga |
45519668 |
T |
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| Q |
292 |
gggtgtggaatatgccatattgttaattcaagctaattaagtagaagttttggtggatattagtcagattgtgaatatggagaattaagtaagggcaggt |
391 |
Q |
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| T |
45519669 |
gggtgtggaatatgccatattgttaattcaagctaattaagtagaatttttggtggatattagtcagattgtgaatatggagaattaagtaagggcaggt |
45519768 |
T |
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| Q |
392 |
gaaaggttaacaaatccactgcaatggaaagcctgtgatgatatcatgtatgtgcattcttgtgtgttggttgatat |
468 |
Q |
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| T |
45519769 |
gaaaggttaacaaatccactgcaatggaaagcctgtgatgatatcatgtatgtgcattcttgtgtgttggttgatat |
45519845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 45519386 - 45519507
Alignment:
| Q |
9 |
agcagagagtcaattgaataattgcattcaagtttgaccttgaagcagttagatgttagctggaatttgcaaaatggatttgtttaaaattgcctactaa |
108 |
Q |
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| T |
45519386 |
agcatagagtcaattgaataattgcattcaagtttgaccttgaagcagttagatgttagctggaatttgcaaaatggatttgtttaaaattgcctactaa |
45519485 |
T |
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| Q |
109 |
ttcaagaacaagaaagtaggca |
130 |
Q |
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| T |
45519486 |
ttcaagaacaagaaagtaggca |
45519507 |
T |
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