View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_high_9 (Length: 385)
Name: NF10931_high_9
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 140 - 376
Target Start/End: Complemental strand, 30078755 - 30078521
Alignment:
| Q |
140 |
gttgaacttataaaaagatcaaaattgttagactctgtgacaagaatttaaaccgtacaacctttatttatgtttcctnnnnnnnntaacctttatttgt |
239 |
Q |
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| T |
30078755 |
gttgaacttataaaaagatcaaaattgttagact--gtgacaagaatttaaaccgtacaacctttatttatgtttcctaaaaaaaacaacctttatttat |
30078658 |
T |
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| Q |
240 |
gtgcttctttcnnnnnnntactttatttatgtgcaaaattgaattaactattatcatttcgctattagattaaaaaacaaaatatcttttgtcaataaat |
339 |
Q |
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| T |
30078657 |
gtgcttctttcaaaaaaatactttatttatgtgcaaaattgaattaactattatcatttcgctattagattaaaaaacaaaatatcttttttcaataaat |
30078558 |
T |
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| Q |
340 |
aactttaataaaggtatgatccagctatgatgtccat |
376 |
Q |
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| T |
30078557 |
aactttaataaaggtatgatccagctatgatgaccat |
30078521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30078945 - 30078857
Alignment:
| Q |
1 |
tgtggtctacttgtttttgtttctactctcttgtgacaccatatctattattttgacaataaaattgatggttaatataattcaaataa |
89 |
Q |
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| T |
30078945 |
tgtggtctactcgtttttgtttctactctcttgtgacaccatttctgttattttgacaataaaattgatggttaatataattcaaataa |
30078857 |
T |
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