View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_low_1 (Length: 960)
Name: NF10931_low_1
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 300 - 948
Target Start/End: Original strand, 30137906 - 30138554
Alignment:
| Q |
300 |
caagtgtggtggcctaatgcaaaggttaccaactatgaaaagcacaccaccaatgaaaatacacattgtggtaaatgatgagaggaaaaccccaaaaagt |
399 |
Q |
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| T |
30137906 |
caagtgtggtggcctaatgcaaaggttaccaactatgaaaagcacaccaccaatgaaaatacacattgtggtaaatgatgagaggaaaaccccaaaaagt |
30138005 |
T |
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| Q |
400 |
cctccaattgcttttggatgtttaagtagagaacaagggtaaaacatggacttgttaatcaaagaaactgaagaaacagttgttctgttaatagctgtaa |
499 |
Q |
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| T |
30138006 |
cctccaattgcttttggatgtttgagtagagaacaagggtaaaacatggatttgttaatcaaagaaactgaagaaacagttgttctgttaatagctgtaa |
30138105 |
T |
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| Q |
500 |
cgacatgtaaaacaccaactaaccaaattaagccactgaagattgaaacaatccaaagggtgaaataattacgatcatcgggttctcgaagcatatggta |
599 |
Q |
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| T |
30138106 |
cgacatgtaaaacaccaactaaccaaattaagccactgaagattgaaacaatccaaagggtgaaataattacgatcatcaggttctcgaagcatatggta |
30138205 |
T |
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| Q |
600 |
aatgaaagaagagataatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaaacttgaaactttgtttgttttggatttgttgaaggaa |
699 |
Q |
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| T |
30138206 |
aatgaaagaagagataatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaaacttgaaactttgtttgttttggatttgttgaaggaa |
30138305 |
T |
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| Q |
700 |
gaaatcatgagagcaagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggttgttttga |
799 |
Q |
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| T |
30138306 |
gaaatcatgagagcaagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggttgttttga |
30138405 |
T |
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| Q |
800 |
agaatcctgctggaagacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatgaaagtgag |
899 |
Q |
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| T |
30138406 |
agaatcctgctggaagacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatgaaagtgag |
30138505 |
T |
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| Q |
900 |
gattggaatggctaaggttaaacctgaagcccatgcaattgatgtccat |
948 |
Q |
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| T |
30138506 |
gattggaatggctaaggttaaacctgaagcccatgcaattgatgtccat |
30138554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 30137622 - 30137852
Alignment:
| Q |
16 |
cagaaaacaccttctttcccattaggtgcacattccaaaatcaaaactcttccaaatgcatgcaaaagtccacttccaatgctttgaacccctccaaata |
115 |
Q |
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| T |
30137622 |
cagaaaacaccttctttcccattaggagcacattccaaaatcaaaactcttccaaatgcatgcaaaagtccacttccaatgctttgaacccctccaaata |
30137721 |
T |
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| Q |
116 |
tcaatatatgacccaatttccaatgactattccaaaaatagaatccaaaaccagaagataacattgatagaagaaaaccaatgattttcattttggcaga |
215 |
Q |
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| T |
30137722 |
tcaatatatgacccaatttccaatgactattccaaaaatagaatccaaaaccagaagataacattgatagaagaaaaccaatgattttcattttggcaga |
30137821 |
T |
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| Q |
216 |
atttgccttaagtaatagctgcaatgggtgc |
246 |
Q |
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| T |
30137822 |
atttgccttaagtaatagctgcaatgggtgc |
30137852 |
T |
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Back To:
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